[Inparanoid] error message ?

Yvan Wenger yvan.wenger at unige.ch
Thu Mar 8 09:16:09 CET 2012


Hello,

When running inparanoid with my set of data I have many such messages
(below), I does not happen with the test set (EC/SC).

By any chance, has someone experienced this or know if it has an
impact on the result?

Best regards,

Yvan

no element found at line 1, column 0, byte -1 at ./blast_parser.pl line 110
[formatdb] WARNING: Cannot add sequence number 93 (lcl|93_./tmpd)
because it has zero-length.

[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.
[blastall] FATAL ERROR: sp|Q86U06|RBM23_HUMAN: Database ./tmpd was not
found or does not exist

no element found at line 1, column 0, byte -1 at ./blast_parser.pl line 110
[formatdb] WARNING: Cannot add sequence number 122 (lcl|122_./tmpd)
because it has zero-length.

[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.
[blastall] FATAL ERROR: sp|Q14498|RBM39_HUMAN: Database ./tmpd was not
found or does not exist

no element found at line 1, column 0, byte -1 at ./blast_parser.pl line 110
[formatdb] WARNING: Cannot add sequence number 50 (lcl|50_./tmpd)
because it has zero-length.

[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.
[blastall] FATAL ERROR: sp|Q7Z2Y5|NRK_HUMAN: Database ./tmpd was not
found or does not exist

no element found at line 1, column 0, byte -1 at ./blast_parser.pl line 110
[formatdb] WARNING: Cannot add sequence number 1 (lcl|1_./tmpd)
because it has zero-length.

[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.
[blastall] FATAL ERROR: -phosphate: Database ./tmpd was not found or
does not exist


More information about the InParanoid mailing list