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<div class="moz-cite-prefix">Hi,<br>
<br>
we don't have any plans to make a new Inparanoid release this
year. The species included in release 8 were taken from the
UniProt complete proteomes, so probably your species was not
there.<br>
<br>
To run inparanoid between human and Chaetomium only takes half a
day though, so I recommend you do that.<br>
<br>
Bests<br>
Erik Sonnhammer<br>
<br>
On 04/01/2014 09:55 AM, Thomas Bock wrote:<br>
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<blockquote cite="mid:533A70ED.1040602@embl.de" type="cite">
<pre wrap="">Dear inparanoid team,
I would like to find orthologs between human and the species Chaetomium
thermophilum. Is it possible to add this species to the gene search list?
The genome of Chaetomium thermophilum was published in 2011, here is the
link to the publication:
<a class="moz-txt-link-freetext" href="http://www.cell.com/abstract/S0092-8674%2811%2900714-8">http://www.cell.com/abstract/S0092-8674%2811%2900714-8</a>
Kind regards,
Thomas Bock
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<br>
On 04/01/2014 11:43 AM, Panagiotis L. Kastritis wrote:<br>
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cite="mid:CAMATQMmLNVvY65g7Xyps1=bLNDRhgaihUcUPUqUVVC+z-FEUzQ@mail.gmail.com"
type="cite">
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<pre><span style="font-family:arial,helvetica,sans-serif">Dear Prof. Erik Sonnhammer,
My name is Panagiotis Kastritis and I am a post-doc researcher in EMBL-Heidelberg. I went through your inparanoid database with great interest and I am very happy that such a resource exists for the community.
I am working on the organism <i>Chaetomium thermophilum</i> (<i>Chaetomium thermophilum</i> (strain DSM 1495 / CBS 144.50 / IMI 039719)), and its genome has been published quite recently (Almacher et al, Cell 2011 - PUBMED ID: 21784248). As a consequence 7182 entries exist in Uniprot but ortholog mapping is, unfortunately, not present in your current database version.
I would be deeply interesting in mapping orthologs of this organism to those from other eukaryotes, as you have done in your database for all these organisms.
Can you suggest me a way on how to do that or whether you plan to update the database in the near future.
Thank you very much for the time you spent on my question,
Kind Regards,
Panos
</span></pre>
<span style="font-family:arial,helvetica,sans-serif">-- <br>
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<div dir="ltr"><span
style="font-family:arial,helvetica,sans-serif">__________________________________<br>
<br>
Dr. Panagiotis L. Kastritis<br>
European Molecular Biology Laboratory</span>
<div><span style="font-family:arial,helvetica,sans-serif">e-mail:
<a moz-do-not-send="true"
href="mailto:panagiotis.kastritis@embl.de"
target="_blank">panagiotis.kastritis@embl.de</a><br>
_________________________________<br>
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<pre wrap="">_______________________________________________
InParanoid mailing list
<a class="moz-txt-link-abbreviated" href="mailto:InParanoid@lists.su.se">InParanoid@lists.su.se</a>
<a class="moz-txt-link-freetext" href="https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se">https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se</a>
</pre>
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