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<div class="moz-cite-prefix">Hi Jun,<br>
<br>
If the 4 species are "evolutionarily equidistant" from each other,
then you can try to use MultiParanoid,
<a class="moz-txt-link-freetext" href="http://multiparanoid.sbc.su.se/">http://multiparanoid.sbc.su.se/</a><br>
<br>
Also Hieranoid <a class="moz-txt-link-freetext" href="http://hieranoid.sbc.su.se/">http://hieranoid.sbc.su.se/</a> may work, but we
acknowledge that Hieranoid has some issues with accuracy at the
moment.<br>
<br>
Bests<br>
Erik Sonnhammer<br>
<br>
On 04/26/2014 08:10 PM, Jun Wang wrote:<br>
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<p class="MsoNormal">Hi,<o:p></o:p></p>
<p class="MsoNormal">I am now dealing with the comparative
genomic project, I want to do orthologous analysis, so I use
this inparanoid4.1 software, and it is good. While my problem
is: I have more than two species, for example, I have four
species (A, B, C, D), how can do it with inparanoid software
in order to have the orthologous gene among the four species.
Should I do like this (AB, AC, AD, BC, BD, CD)? And then
extract the orthologous gene name manually? Thank you very
much, I really appreciate it!<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Bests,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Jun Wang<o:p></o:p></p>
<p class="MsoNormal">University of Nebraska at Omaha<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
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