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<div class="moz-cite-prefix">On 11/10/2014 12:27 PM, Sammy Desilva
wrote:<br>
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<div>As mentioned in <a moz-do-not-send="true"
href="http://inparanoid.pl">inparanoid.pl</a> $run_blast
could be set 0 if we have the blast files. For the pairwise
comparison of a big dataset I want to run the blastall on
cluster. Could you tell me which parameter-set of blastall I
should use so that there will be no difference in results
(when $run_blast is 1)? </div>
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Hi, simply use the same parameters ;)<br>
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You can save compute time by running the "A-A" comparisons only
once. If you run the script for each species comparisons, A-A and
B-B will be rerun every time, so you almost save half the compute if
you just do it once for the whole batch.<br>
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<div>Next, when setting $run_blast = 0 the blastall results
should already be parsed?<br>
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Yes.<br>
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/Erik<br>
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Thanks.<br>
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Sammy<br>
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