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<div class="moz-cite-prefix">Yes, but bear in mind that InParanoid
is oriented towards eukaryotes. The only prokaryotes that are
included right now are there because they are part of the Quest
for Orthologs Consortium's reference proteomes. In other words,
it is unlikely that we will included two M. tuberculosis.<br>
<br>
Bests<br>
Erik<br>
<br>
On 2015-10-06 17:46, Megan Rees wrote:<br>
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<p>Yes - I was a bit puzzled by that as the database list
doesn't indicate that it is the reference strain but I tried a
practice search against another species and when clicking on
the Mtb proteins identified the Uniprot link takes me to the
protein for M.tb H37Rv. </p>
<p><br>
</p>
<p>So could I also then request Mycobacterium tuberculosis h37Rv
to also be added the RefSeq identifier is <a
moz-do-not-send="true" target="_blank"
href="http://www.ncbi.nlm.nih.gov/nuccore/NC_000962.3"
style="outline: 0px; color: rgb(100, 42, 143);
text-decoration: none; font-family: arial; font-size: 10px;
line-height: 13px; text-align: -webkit-center;"
id="LPlnk693114"
title="http://www.ncbi.nlm.nih.gov/nuccore/NC_000962.3
Ctrl+Click or tap to follow the link">NC_000962.3</a> ?</p>
<p><br>
</p>
<p>Thanks Megan</p>
<br>
<br>
<div style="color: rgb(0, 0, 0);">
<hr tabindex="-1" style="display:inline-block; width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font style="font-size:11pt"
color="#000000" face="Calibri, sans-serif"><b>From:</b>
InParanoid
<a class="moz-txt-link-rfc2396E" href="mailto:inparanoid-at-sbc.su.se-bounces@lists.su.se"><inparanoid-at-sbc.su.se-bounces@lists.su.se></a> on
behalf of Erik Sonnhammer
<a class="moz-txt-link-rfc2396E" href="mailto:erik.sonnhammer@scilifelab.se"><erik.sonnhammer@scilifelab.se></a><br>
<b>Sent:</b> Tuesday, October 6, 2015 11:50 AM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:inparanoid-at-sbc.su.se@lists.su.se">inparanoid-at-sbc.su.se@lists.su.se</a><br>
<b>Subject:</b> Re: [Inparanoid] Adding a database to the
Inparanoid web interface</font>
<div> </div>
</div>
<div>
<div class="moz-cite-prefix">On 10/06/2015 04:25 PM, Megan
Rees wrote:<br>
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<p>Thank you Erik, </p>
<p><br>
</p>
<p>I would like to request the addition of </p>
<p>Mycobacterium kansasii ATCC 12478 including its
plasmid. These have the Refseq identifiers of <a
moz-do-not-send="true" target="_blank"
href="http://www.ncbi.nlm.nih.gov/nuccore/NC_022663.1"
id="LPlnk756419" style="outline:0px;
color:rgb(100,42,143); text-decoration:none;
font-family:arial; font-size:10px;
line-height:17.901px">NC_022663.1</a> and <a
moz-do-not-send="true" target="_blank"
href="http://www.ncbi.nlm.nih.gov/nuccore/NC_022654.1"
title="http://www.ncbi.nlm.nih.gov/nuccore/NC_022654.1
Ctrl+Click or tap to follow the link"
style="color:rgb(100,42,143); text-decoration:none;
font-family:arial; font-size:10px;
line-height:17.901px">NC_022654.1</a>. I can send
you fasta files if that is helpful. </p>
<p>Can I assume that the Mycobacterium tuberculosis is
the standard reference strain H37Rv?</p>
</div>
</blockquote>
I guess not - clicking on the Uniprot link in the InParanoid
Summary gives<br>
<br>
<table class="databaseTable">
<tbody>
<tr>
<td class="first-column"><a moz-do-not-send="true"
href="http://www.uniprot.org/help/taxonomy#strain"><span>Strains
<sup>i</sup></span></a></td>
<td>› 1254<br>
› An03<br>
› Canetti<br>
› Isolate 50410<span style="color:gray">, 50410</span><br>
› Mt103</td>
</tr>
</tbody>
</table>
<br>
/Erik<br>
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<p><br>
</p>
<p>Regards</p>
<p>Megan</p>
<br>
<br>
<div style="color:rgb(0,0,0)">
<hr tabindex="-1" style="display:inline-block;
width:98%">
<div id="divRplyFwdMsg" dir="ltr"><font
style="font-size:11pt" color="#000000"
face="Calibri, sans-serif"><b>From:</b> InParanoid
<a moz-do-not-send="true"
class="moz-txt-link-rfc2396E"
href="mailto:inparanoid-at-sbc.su.se-bounces@lists.su.se">
<inparanoid-at-sbc.su.se-bounces@lists.su.se></a> on behalf of
Erik Sonnhammer <a moz-do-not-send="true"
class="moz-txt-link-rfc2396E"
href="mailto:erik.sonnhammer@scilifelab.se">
<erik.sonnhammer@scilifelab.se></a><br>
<b>Sent:</b> Tuesday, October 6, 2015 11:16 AM<br>
<b>To:</b> <a moz-do-not-send="true"
class="moz-txt-link-abbreviated"
href="mailto:inparanoid-at-sbc.su.se@lists.su.se">
inparanoid-at-sbc.su.se@lists.su.se</a><br>
<b>Subject:</b> Re: [Inparanoid] Adding a database
to the Inparanoid web interface</font>
<div> </div>
</div>
<div>
<div class="moz-cite-prefix">Sure, but I can't
estimate when it will appear.<br>
<br>
Erik<br>
<br>
On 10/06/2015 04:12 PM, Megan Rees wrote:<br>
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<p>How can I request the addition of another
organism to the Inparanoid web interface so
that I can perform comparisons?</p>
<p><br>
</p>
<p>Thanks Megan</p>
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<br>
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