<html>
  <head>
    <meta content="text/html; charset=utf-8" http-equiv="Content-Type">
  </head>
  <body bgcolor="#FFFFFF" text="#000000">
    <div class="moz-cite-prefix"> sounds like you have zero-length
      sequences - try removing these.<br>
      <br>
      Erik<br>
      <br>
      On 2016-05-12 15:08, Ricardo de Marco wrote:<br>
    </div>
    <blockquote
cite="mid:CADQkNk0UZhEYBpNmjggTryRNcwPpMmeSTrT4jPQzuSpJd=uGXg@mail.gmail.com"
      type="cite">
      <div dir="ltr">
        <div>
          <div>
            <div>I am running inparanoid v4.1 and performed the
              installation of all components including v 2.2.16 of
              standalone blast. The last two runs I made with the
              program apparently performed well, but i got several
              warnings like this in the last steps of the program:<br>
              no element found at line 1, column 0, byte -1 at ./<a
                moz-do-not-send="true" href="http://blast_parser.pl"
                target="_blank">blast_parser.pl</a> line 110.<br>
              [formatdb] WARNING: Cannot add sequence number 3
              (lcl|3_./tmpd) because it has zero-length.<br>
              <br>
              [formatdb] FATAL ERROR: Fatal error when adding sequence
              to BLAST database.<br>
              [blastall] WARNING: Unable to open tmpd.pin<br>
              [blastall] WARNING: CDF34032: Unable to open tmpd.pin<br>
              [blastall] WARNING: CDF34032: Unable to open tmpd.pin<br>
              [blastall] FATAL ERROR: CDF34032: Database ./tmpd was not
              found or does not exist<br>
            </div>
            I would like to know if you know what could be causing this
            and if this affects the final result of the program.<br>
          </div>
          Thank you for your attention.<br>
        </div>
        Ricardo<br>
      </div>
      <br>
      <fieldset class="mimeAttachmentHeader"></fieldset>
      <br>
      <pre wrap="">_______________________________________________
InParanoid-at-sbc.su.se mailing list
<a class="moz-txt-link-abbreviated" href="mailto:InParanoid-at-sbc.su.se@lists.su.se">InParanoid-at-sbc.su.se@lists.su.se</a>
<a class="moz-txt-link-freetext" href="https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se">https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se</a>
</pre>
    </blockquote>
    <br>
  </body>
</html>