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<div class="moz-cite-prefix">Hi Fritz,<br>
<br>
yes the score depends on blast options such as score matrix
adjustment. You can see the used options in the inparanoid.pl
script.<br>
<br>
Erik<br>
<br>
On 2016-10-27 23:19, <a class="moz-txt-link-abbreviated" href="mailto:fritz.franz@gmx.net">fritz.franz@gmx.net</a> wrote:<br>
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cite="mid:trinity-a89e6d75-f86e-424b-865e-dfb498fa1239-1477603177373@3capp-gmx-bs33"
type="cite">
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<div>Hi everybody,</div>
<div>I have a question concerning the BLAST scores in
InParanoid8. I realized that the BLAST scores are pretty
different from the scores I get in a standard BLAST search
at <a moz-do-not-send="true"
href="http://blast.ncbi.nlm.nih.gov/">blast.ncbi.nlm.nih.gov</a>.
I assume that InParanoid automated BLAST searches use a
different set of BLAST scoring parameters than standard. Do
you know what the settings are? Or is there a different
reason why the BLAST scores are different?</div>
<div>Thank you very much for your help!</div>
<div>Fritz Franz</div>
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