From tommi.raimo.leo.suvitaival at regionh.dk Mon Jul 6 10:48:37 2020 From: tommi.raimo.leo.suvitaival at regionh.dk (Tommi Raimo Leo Suvitaival) Date: Mon, 6 Jul 2020 08:48:37 +0000 Subject: [SocBiN] Post-Doc Position at Steno Diabetes Center Copenhagen Message-ID: Dear All, We are looking for a post-doc bioinformatician to work on clinical research projects in the Systems Medicine & Metabolomics Team at Steno Diabetes Center Copenhagen (SDCC). The two-year position is focused on solving and disseminating research questions on diabetes, its treatment, comorbidities and complications, by integrating data from our metabolomics and lipidomics platforms as well as from other molecular profiles within research projects. Please find out more about the Systems Medicine team at https://legido-quigley-lab.com and see some highlights from our recent papers at https://urlproxy.sunet.se/canit/urlproxy.php?_q=aHR0cHM6Ly90b21taS1zLmNvbQ%3D%3D&_s=ZGVmYXVsdA%3D%3D&_c=148f6931&_r=c3Utc2U%3D . You are welcome to apply before July 10 at https://candidate.hr-manager.net/ApplicationInit.aspx?cid=342&ProjectId=225033 ! Best regards, Tommi Tommi Suvitaival Post-doc Mail: tommi.raimo.leo.suvitaival at regionh.dk Skype: tommi.suvitaival Web: tommi-s.com Steno Diabetes Center Copenhagen Systems Medicine Niels Steensens Vej 2-4 DK-2820 Gentofte This e-mail and any attachment may contain confidential and privileged material intended for the addressee only. If you are not the addressee, you are notified that no part of the e-mail or any attachment may be disclosed, copied or distributed, and that any other action related to this e-mail or attachment is strictly prohibited, and may be unlawful. If you have received this e-mail by error, please notify the sender immediately by return e-mail, and delete this message. ________________________________ Region Hovedstaden anvender de personoplysninger, du giver os i forbindelse med din henvendelse. Du kan laese mere om form?let med anvendelsen samt dine rettigheder p? vores hjemmeside: www.regionh.dk/persondatapolitik -------------- next part -------------- An HTML attachment was scrubbed... URL: From Rolf.I.Skotheim at rr-research.no Wed Jul 8 10:31:42 2020 From: Rolf.I.Skotheim at rr-research.no (Rolf I. Skotheim) Date: Wed, 8 Jul 2020 08:31:42 +0000 Subject: [SocBiN] Two positions: Postdoc/Researcher in cancer genomics at Oslo University Hospital-Radiumhospitalet Message-ID: <53884856FB6613478340EBDBA97D8B010DAE1031@RHS-EXCHANGE-01.ad.medicalresearch.no> Dear all, We have two vacant positions as postdoc or researcher (depending on qualifications) in cancer genomics at the Genome Biology Group, Dept. Mol. Oncology, Institute for Cancer Research, Oslo University Hospital-Radiumhospitalet. The group's projects are directed towards improvement of cancer diagnosis and management by utilization of genome technologies. Particular emphasis is on translational research of prostate cancer. The research project will involve analysis of multiple omics and clinical data, and in particular, high-throughput DNA and RNA-sequencing data. The research will involve database work, machine learning, scripting, etc., both to develop and establish new analytical flow for genomics using existing software, and to develop new ones. The candidate will contribute at all phases of the project, including planning, implementation, discussion of implications of the results, and presentation of the project, orally and manuscript preparation. For full announcement, please have a look at the OUH Webcruiter site, or the attached PDF. Best regards, Rolf Skotheim - - Group leader Genome Biology Group Department of Molecular Oncology Institute for Cancer Research Oslo University Hospital-Radiumhospitalet P. O. Box 4953 Nydalen, 0424 Oslo, Norway Tel: +47 2278 1727 http://www.ous-research.no/molecularoncology Professor II Biomedical Informatics, Section for Machine Learning Department of Informatics University of Oslo http://www.mn.uio.no/ifi/english/research/groups/bmi NCMM Associate Investigator Centre for Molecular Medicine Norway, University of Oslo https://www.med.uio.no/ncmm/english/about/collaborations/associate-investigators/ -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: 20200708_TwoPositions_PostdocResearcher.pdf Type: application/pdf Size: 707742 bytes Desc: 20200708_TwoPositions_PostdocResearcher.pdf URL: From Joana.Goncalves at tudelft.nl Wed Jul 8 15:06:55 2020 From: Joana.Goncalves at tudelft.nl (=?utf-8?B?Sm9hbmEgR29uw6dhbHZlcyAtRVdJ?=) Date: Wed, 8 Jul 2020 13:06:55 +0000 Subject: [SocBiN] Postdoc TU Delft: modelling single-cell heterogeneity in response to proton therapy Message-ID: <637C1C8F-8AB6-4C34-B927-B0EB6D534068@tudelft.nl> Dear all, We are looking for a 2-year computational postdoc in a flagship collaboration between the TU Delft, the Erasmus MC, and the Holland Proton Therapy Center under the Convergence for Health and Technology initiative. The project aims to model single-cell heterogeneity in response to proton therapy in head and neck cancer patient biopsies. The computational postdoc at the TU Delft will work alongside a fellow experimental postdoc at Erasmus MC to: (1) characterize (un)treated tumor samples at the single-cell level using optogenetic imaging, photoselection, and single-cell RNA sequencing; (2) model single-cell and subclonal response to treatment based on transcriptomic profiles and functional imaging features, including cell dynamics and morphology; (3) identify and interpret biomarker signatures associated with resistance to proton therapy. The successful candidate should have a background in computer science or related, and experience in bioinformatics. There is ample opportunity for innovation and development of new ideas on fundamental algorithmic and statistical learning topics, in connection with this and other projects ongoing in the lab. The postdoc will be primarily affiliated with the Gonçalves lab in the Department of Intelligent Systems at the TU Delft, with a secondary appointment in the Chien lab at Erasmus MC, and will be embedded in a larger network of 24 postdocs funded by the Convergence initiative. The successful candidate will work in a highly multidisciplinary environment, and interact with a diverse group of faculty in computer science, pattern recognition and machine learning, bioinformatics, biomedical science, and molecular biology. This project will also enable access to and collaboration with other leading research scientists and laboratories in the Netherlands, including the Oncode Institute. See some of what we are currently working on at http://joanagoncalves.org/people.html. If you believe that you are a great fit, we would like to hear from you! For more information please contact me (joana.goncalves at tudelft.nl), or apply directly at https://convergence.healthandtechnology.nl/square/position/37. Applications sent before July 18, 2020 will be given priority. Please, share this information with potential candidates. Kind regards, Joana -- Joana Gonçalves Assistant Professor TU Delft Faculty EEMCS, Dept. Intelligent Systems Van Mourik Broekmanweg 6, 2628 XE Delft Building 28, Office E05.060 http://joanagoncalves.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From sermarcue at gmail.com Thu Jul 9 16:28:27 2020 From: sermarcue at gmail.com (Sergio Martinez Cuesta) Date: Thu, 9 Jul 2020 15:28:27 +0100 Subject: [SocBiN] Research Associate in Bioinformatics (Cambridge, UK) Message-ID: Dear all, We have a research associate position in bioinformatics available in our group in Cambridge, UK. It would be great if you could please circulate the ad with whoever may be interested. We seek a highly motivated computational researcher for a key role within Professor Sir Shankar Balasubramanian's pioneering research programme at the Cancer Research UK Cambridge Institute (CI). Our research focuses on the chemical biology of the genome and epigenome ( https://urlproxy.sunet.se/canit/urlproxy.php?_q=aHR0cHM6Ly93d3cuYmFsYXN1YnJhbWFuaWFuLmNvLnVrL3B1YmxpY2F0aW9ucw%3D%3D&_s=ZGVmYXVsdA%3D%3D&_c=12c42345&_r=c3Utc2U%3D). Our lab invents and applies new computational methods for the analysis of sequence, structure and chemical modifications in DNA and RNA. This position provides opportunities to develop computational tools at the interface between chemistry, biology and bioinformatics from experimental design to the analysis of novel types of data in collaboration with talented experimental scientists. http://www.jobs.cam.ac.uk/job/24439/ Deadline for applications *20th July 2020* Thanks in advance Sergio -------------- next part -------------- An HTML attachment was scrubbed... URL: From arne at bioinfo.se Sat Jul 11 23:21:16 2020 From: arne at bioinfo.se (Arne Elofsson) Date: Sat, 11 Jul 2020 23:21:16 +0200 Subject: [SocBiN] COVID-19 Data Portal Sweden Message-ID: https://www.covid19dataportal.se/about/#open-positions -------------- next part -------------- An HTML attachment was scrubbed... URL: From kimleeng at gmail.com Mon Jul 27 09:25:40 2020 From: kimleeng at gmail.com (Kim Ng) Date: Mon, 27 Jul 2020 09:25:40 +0200 Subject: [SocBiN] Developer position in SSI (Copenhagen) Message-ID: Dear all, Looking for a full stack developer for the project I'm associated with at Statens Serum Institut (Copenhagen, Denmark). https://candidate.hr-manager.net/ApplicationInit.aspx?cid=5001&ProjectId=133795&DepartmentId=9178&MediaId=5&SkipAdvertisement=False&uiculture=en The project is on microbial data sharing infrastructure between EU members in a consortium (BeOne). While the documentation has yet to be updated the base source code can be looked at https://github.com/ssi-dk/bifrost. The tech/process stack is python, devops, docker, mongoDB, dash/plotly (with some flexibility). Candidates from abroad are encouraged to apply as well. The working group for this is in English and as someone that moved to Denmark myself I can say that it's a wonderful country to live in with great social net and work life balance (37hr work week, controlled pay tiers and plenty of vacation days) and this may be a great opportunity to see what it's like to live here. While it's a 2 year position there is often opportunity that you'll be able to stay longer. Feel free to email me if you have additional questions. Kind regards, -Kim Ng -------------- next part -------------- An HTML attachment was scrubbed... URL: