From tiia.pelkonen at helsinki.fi  Tue Sep  1 15:31:08 2020
From: tiia.pelkonen at helsinki.fi (Pelkonen, Tiia M)
Date: Tue, 1 Sep 2020 13:31:08 +0000
Subject: [SocBiN] Postdoc position at University of Helsinki in
 computational oncology
In-Reply-To: <HE1PR0701MB2906A6C93D787377EC263A25EFE50@HE1PR0701MB2906.eurprd07.prod.outlook.com>
References: <HE1PR0701MB2906A6C93D787377EC263A25EFE50@HE1PR0701MB2906.eurprd07.prod.outlook.com>
Message-ID: <HE1PR0702MB382010076477214EE6A30855EF2E0@HE1PR0702MB3820.eurprd07.prod.outlook.com>

The Systems Biology of Drug Resistance in Cancer research group (https://tinyurl.com/UH-sysbio) at the University of Helsinki, Finland, focuses on understanding and overcoming drug resistance in cancers, especially in ovarian cancer. Our group is now seeking ambitious postdocs to join our team of bioinformaticians, geneticists, mathematicians, biomedical experts and clinical fellows.

More information on the position and application details at:
https://www.helsinki.fi/en/open-positions/postdoctoral-fellow-in-computational-oncology

Application deadline is 30.9.2020. If you have questions about the positions, please contact sampsa.hautaniemi at helsinki.fi

Please forward the information to any suitable candidates,
Tiia


--
Tiia Pelkonen
Project coordinator

Biomedicum Helsinki 1, room B317b
Haartmaninkatu 8 (POB 63), 00014 University of Helsinki
Finland

Email: tiia.pelkonen at helsinki.fi
Phone: +358 2941 25677 / +358 50 3199 520

http://project-hercules.eu/ http://www.helsinki.fi/tumor-genetics-coe

________________________________
Lähettäjä: Pelkonen, Tiia M <tiia.pelkonen at helsinki.fi>
Lähetetty: keskiviikko 4. maaliskuuta 2020 18.06
Vastaanottaja: socbin at sbc.su.se <socbin at sbc.su.se>
Aihe: Two postdoc positions at University of Helsinki in computational cancer research & cancer genomics


The Systems Biology of Drug Resistance in Cancer research group (https://tinyurl.com/UH-sysbio) at the University of Helsinki, Finland, focuses on understanding and overcoming drug resistance in cancers, especially in ovarian and breast cancer. Our group is now seeking ambitious postdocs to join our team of bioinformaticians, geneticists, mathematicians, biomedical experts and clinical fellows to:

1)  design and apply mathematical, statistical & computational approaches on novel and complex problems in cancer drug resistance
https://www.helsinki.fi/en/open-positions/postdoctoral-fellow-in-computational-cancer-research

2)  study drug resistance using ovarian cancer genomics and transcriptomics data, designing studies that involve novel sequencing approaches and identifying predictive biomarkers and therapeutic targets
https://www.helsinki.fi/en/open-positions/postdoctoral-researcher-in-cancer-genomics

For more information on the positions and application details, click on the above links. Application deadline is 31.3.2020. If you have questions about the positions, please contact sampsa.hautaniemi at helsinki.fi

Please forward the information to any suitable candidates,
Tiia

--
Tiia Pelkonen
Project coordinator

Biomedicum Helsinki 1, room B317b
Haartmaninkatu 8 (POB 63), 00014 University of Helsinki
Finland

Email: tiia.pelkonen at helsinki.fi
Phone: +358 2941 25677 / +358 50 3199 520

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From jing.tang at helsinki.fi  Thu Sep  3 13:58:51 2020
From: jing.tang at helsinki.fi (Tang, Jing)
Date: Thu, 3 Sep 2020 11:58:51 +0000
Subject: [SocBiN] Postdoc positions at University of Helsinki in network
 modelling
Message-ID: <6f82446a92b745f893c4323d11ea8bd3@helsinki.fi>

Dear All,
The Network pharmacology for precision medicine group (https://www.helsinki.fi/en/researchgroups/network-pharmacology-for-precision-medicine) at the University of Helsinki is looking for 1-2 ambitious postdocs to work on network modelling of biological datasets to predict personalized drug combinations.
More information on the positions can be found at:
https://www.helsinki.fi/en/open-positions/postdoctoral-researcher-in-biological-network-modelling
Application deadline is 30.09.2020. For more questions please contact jing.tang at helsinki.fi<mailto:jing.tang at helsinki.fi>.

Best,
Jing

-------------------------------------------------------------------------------------------------------------
Jing Tang, PhD, Assistant Professor, Academy of Finland Research Fellow
Network Pharmacology for Precision Medicine Group
Research Program in Systems Oncology, Faculty of Medicine
University of Helsinki, Finland
https://www.helsinki.fi/en/researchgroups/network-pharmacology-for-precision-medicine
https://twitter.com/netpharmed

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From arne at bioinfo.se  Tue Sep  8 08:41:43 2020
From: arne at bioinfo.se (Arne Elofsson)
Date: Tue, 8 Sep 2020 08:41:43 +0200
Subject: [SocBiN] =?utf-8?q?Fwd=3A_Bornberglab_=28M=C3=BCnster=29_is_looki?=
	=?utf-8?q?ng_for_a_Postdoctoral_Research_Associate_in_theoretical/?=
	=?utf-8?q?mathematical_molecular_evoutionary_biology/chemistry_=28?=
	=?utf-8?q?fwd=29?=
In-Reply-To: <alpine.DEB.2.20.2009080819420.4610@lenovo6>
References: <alpine.DEB.2.20.2009080819420.4610@lenovo6>
Message-ID: <CAND8g_ZmFcZrDuOxkF85exT3EhBt6xXQTrdOAsXv-Aupbv7Rag@mail.gmail.com>

Forwarded from E. Bornberg

Dear Friends and Colleagues,

I would appreciate if you could help notify or identify suitable candidates:

https://www.uni-muenster.de/Rektorat/Stellen/ausschreibungen/st_20202408_jm1.html

In brief, we are looking for an enthusiastic, organised and determined
postdoctoral researcher with an educational background in (bio-)chemistry,
(bio-)physics, mathematics and/or bioinformatics who has strong publication
record and experience in analysing biological data concerning protein
and/or genome evolution or modelling molecular evolutionary scenarios.

S/he will participate in several projects (see
http://bornberglab.org/researches for details)
such as the reconstruction and functional testing of past evolutionary
events of genes, genomes and proteins, modelling molecular fitness
landscapes and analysing the emergence and functionality of de novo
emerged proteins.
The successful candidate is expected to have a proven publication and
presentation record in English, to be ready and willing to supervise
students and will be encouraged and expected to build up their own
related research agenda in order to apply for additional funding.

Applications should be sent to ebb.admin at wwu.de asap, we expect the
post holder to take up post in early 2021 but there is no fixed
starting date. Tenure is initially 3 years and can be extended.

Many thanks, eb

Related references:
https://pubmed.ncbi.nlm.nih.gov/22927372/
https://pubmed.ncbi.nlm.nih.gov/30201962/
https://pubmed.ncbi.nlm.nih.gov/31636435/
https://pubmed.ncbi.nlm.nih.gov/27288445/
https://pubmed.ncbi.nlm.nih.gov/18479505/


Erich Bornberg-Bauer PhD, Prof. of Molecular Evolution + Genomeinformatics
Institute for Evolution and Biodiversity, Huefferstrasse 1 D-48149 Germany
Westfalian Wilhelms University Muenster, bornberglab.org  ebb.admin at wwu.de
Phone / Fax / Direct Line: +49 (0) 251 83 21630 / 24668 / 21011

Mind the environment: don't spam, chat, surf etc., see:  websitecarbon.com
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From Tanja.Slotte at scilifelab.se  Tue Sep  8 09:15:53 2020
From: Tanja.Slotte at scilifelab.se (Tanja Slotte)
Date: Tue, 8 Sep 2020 09:15:53 +0200
Subject: [SocBiN] PhD student position in Evolutionary Genomics,
 Stockholm University
Message-ID: <2A1F7C39-D33B-4208-8FA9-844C53812CDA@scilifelab.se>

*PhD student position at Stockholm University*

We have an opening for a PhD student as part of the Swedish Research Council funded project “The role of structural variation for the origin and evolution of a classic supergene”. Within this project, the student will generate and analyse comparative genomic and population genomic data from wild flaxseed species (Linum) to test hypotheses on the origin and evolution of the distyly supergene.  

We are looking for applicants with a strong background and interest in evolutionary genetics, and a desire to work with genomic analyses. Experience of bioinformatic analyses is a merit.
The position is for 4 years, and the deadline to apply is September 28, 2020. The PhD student will be based in the research group of Dr. Tanja Slotte (http://tanjaslottelab.se).

Full ad and information on how to apply at the Stockholm University website: https://bit.ly/2QX31SL

For more information, please contact Dr. Tanja Slotte directly at tanja.slotte at su.se.

---------------------------

Tanja Slotte  
PhD, Associate Professor
SciLifeLab Fellow
Department of Ecology, Environment and Plant Sciences (DEEP)
Stockholm University 
106 91 Stockholm

E-mail: tanja.slotte at su.se

From jonas.paulsen at ibv.uio.no  Thu Sep 10 09:47:36 2020
From: jonas.paulsen at ibv.uio.no (Jonas Paulsen)
Date: Thu, 10 Sep 2020 07:47:36 +0000
Subject: [SocBiN] Postdoc position at University of Oslo in bioinformatics
 and 3D genome modeling
Message-ID: <1599724056942.10153@ibv.uio.no>

A 3-year bioinformatics postdoctoral position (Scientia Fellows / Marie Curie) is available at the Centre for Bioinformatics, University of Oslo, Norway. The position is an open/independent project related to 3D genome modeling. A project description has to be defined and written together with the host, Associate Professor Jonas Paulsen.

Duration of position: 3 years (fully funded)
Relevant skills: Bioinformatics / Computational Biology / Programming / Physics / Modeling / or similar.
Salary offered: Min. ~49,000 EUR/year (min. NOK 523,200/year )
Earliest starting date: Feb/Mar 2021
Latest starting date: Nov 2021
How to apply: E-mail with CV to jonas.paulsen at ibv.uio.no before 20. October 2020. Further information on the application process will be provided via e-mail to relevant candidates.
Read more about the group here: https://www.mn.uio.no/sbi/english/groups/paulsen-group/

???
________________________________
Jonas Paulsen, PhD

Associate Professor

Section for Genetics and Evolutionary Biology (EVOGENE)

Department of Biosciences

University of Oslo

Tel: +47 41147241

________________________________

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From erik.sonnhammer at scilifelab.se  Thu Sep 10 12:03:39 2020
From: erik.sonnhammer at scilifelab.se (Erik Sonnhammer)
Date: Thu, 10 Sep 2020 12:03:39 +0200
Subject: [SocBiN] Bioinformatics Postdoc position in Stockholm
Message-ID: <87d346d8-1e16-e7e5-2324-90f1b53190f0@scilifelab.se>

We have an opening for a Postdoctoral Fellow in Bioinformatics at 
SciLifeLab Stockholm.

See attachment and 
https://www.su.se/english/about/working-at-su/jobs?rmpage=job&rmjob=13011&rmlang=UK 


Erik Sonnhammer, Ph.D.
Professor of Bioinformatics
DBB, Stockholm University
Science for Life Laboratory
Stockholm, Sweden
Email: Erik.Sonnhammer at scilifelab.se
Web: http://sonnhammer.org

Description: twitter (20x20) <https://twitter.com/eriksonnhammer>

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From Erik.Bongcam at slu.se  Thu Sep 10 19:29:53 2020
From: Erik.Bongcam at slu.se (Erik Bongcam Rudloff)
Date: Thu, 10 Sep 2020 17:29:53 +0000
Subject: [SocBiN] EMBnet Online Conference:
In-Reply-To: <1599724056942.10153@ibv.uio.no>
References: <1599724056942.10153@ibv.uio.no>
Message-ID: <DB823034-83CB-4FC8-8F8F-76E392F2A449@slu.se>

Dear all,

I would like to announce the EMBnet Conference "Bioinformatics Approaches to Precision Research"

23-24 September 2020

Zoom Platform - Time 15pm to 20 pm (CEST)

Free registration at: https://us02web.zoom.us/meeting/register/tZEvd-mupjwiE911qtAnYln4TrNwQlxDMYm4

Welcome!

Erik


-----------------------------------
Dr. Erik Bongcam-Rudloff
Professor of Bioinformatics
Head of SLU Bioinformatics Infrastructure (SLUBI)
Head of SGBC
SLU-Uppsala
+46-(0)72-535 55 87
+46 (0)18-67 21 21



---
N?r du skickar e-post till SLU s? inneb?r detta att SLU behandlar dina personuppgifter. F?r att l?sa mer om hur detta g?r till, klicka h?r <https://www.slu.se/om-slu/kontakta-slu/personuppgifter/>
E-mailing SLU will result in SLU processing your personal data. For more information on how this is done, click here <https://www.slu.se/en/about-slu/contact-slu/personal-data/>
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From jenni.e.hamalainen at helsinki.fi  Mon Sep 14 14:48:25 2020
From: jenni.e.hamalainen at helsinki.fi (=?utf-8?B?SMOkbcOkbMOkaW5lbiwgSmVubmkgRQ==?=)
Date: Mon, 14 Sep 2020 12:48:25 +0000
Subject: [SocBiN] Open postdoctoral position in computational cancer and
 autoimmunity research (University of Helsinki)
Message-ID: <BB0756DC-B1A9-4A27-82FF-DB2CEB6CC7FD@helsinki.fi>

Call for Post-doctoral Researcher in Bioinformatics

Mustjoki lab (www.helsinki.fi/hematology<http://www.helsinki.fi/hematology>) at the University of Helsinki and Helsinki University Comprehensive Cancer Center has an opening for a (postdoc) researcher in computational cancer and autoimmunity research. The new researcher will play a critical role in the computational analysis and statistical modelling of large-size WES, WGS, lncRNA-seq, and scRNA-seq datasets and integration of these data with clinical information. Research results of the group are mostly published in precious journals (please see the latest listing at https://pubmed.ncbi.nlm.nih.gov/?term=mustjoki&sort=date ).

We require fluency with Python, Perl, R or equivalent in a UNIX environment. Experience in biostatistics and machine-learning as well as understanding on and/or demonstrated ability to process genomics data is desired. Strong publication record is an advantage. Applications for this position will be accepted until the position is filled. Salary will depend upon the applicant's level of skills, knowledge, and abilities and is based on university salary system.

To apply, please send your application including resume and cover letter via email to satu.mustjoki at helsinki.fi<mailto:satu.mustjoki at helsinki.fi> ja matti.kankainen at helsinki.fi<mailto:matti.kankainen at helsinki.fi> with the title genome_bioinfo_2020. We also welcome informal queries on the position.



--

Jenni Hämäläinen
Projektikoordinaattori / Project Coordinator
Translational Immunology Program (TRIMM)
Hematology Research Unit
University of Helsinki
jenni.e.hamalainen at helsinki.fi
0294126613 (+358504524919)

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From coordinator at rth.dk  Wed Sep 16 08:36:54 2020
From: coordinator at rth.dk (Betina Wingreen Jensen)
Date: Wed, 16 Sep 2020 08:36:54 +0200
Subject: [SocBiN] PhD fellowship in CRISPR bioinformatics at UCPH available
 from Dec 1, 2020
Message-ID: <001801d68bf3$c466bef0$4d343cd0$@rth.dk>

Dear All,

We have a PhD fellowship in CRISPR bioinformatics available from Dec 1, 2020
or as soon as possible thereafter. The PhD will be working at the Department
of Veterinary and Animal Sciences, University of Copenhagen on the research
project CRISPRcomp funded by The Independent Research Council.

Please help us spread the word by forwarding this email to possible
candidates in your network. Thank you in advance.

PhD fellowship in CRIPSR bioinformatics Department of Veterinary and Animal
Sciences

Full ad: https://jobportal.ku.dk/phd/?show=152578

Application deadline: Oct 4, 2020

Best wishes,

Betina 

 

Betina Wingreen Jensen

Project Manager

 

University of Copenhagen

Faculty of Health and Medical Sciences

Department of Veterinary and Animal Sciences

Groennegaardsvej 7

&

Thorvaldsensvej 57

DK- 1870 Frederiksberg

 

 

TEL +45 35 33 47 04

MOB +45 21 51 09 32

 <mailto:bwj at sund.ku.dk> bwj at sund.ku.dk

 

  

 

 <https://www.facebook.com/universitet>
<https://www.instagram.com/university_of_copenhagen>
<https://www.linkedin.com/company/university-of-copenhagen>
<https://twitter.com/koebenhavns_uni>
<https://www.futurity.org/university/university-of-copenhagen/>
<https://theconversation.com/institutions/university-of-copenhagen-1186>
<http://www.ku.dk/>  

 

 
<https://informationssikkerhed.ku.dk/english/protection-of-information-priva
cy/privacy-policy/> How we protect personal data

 

 

 

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From arne at bioinfo.se  Wed Sep 23 14:30:54 2020
From: arne at bioinfo.se (Arne Elofsson)
Date: Wed, 23 Sep 2020 14:30:54 +0200
Subject: [SocBiN] Fwd: Short survey request
In-Reply-To: <HE1PR0102MB3194052CFAB1A1CF0482FA26CF380@HE1PR0102MB3194.eurprd01.prod.exchangelabs.com>
References: <HE1PR0102MB3194052CFAB1A1CF0482FA26CF380@HE1PR0102MB3194.eurprd01.prod.exchangelabs.com>
Message-ID: <CAND8g_Znk0Gc13spst+pdfAi-w_ZfYftRfikcS=xQ6tRXaMSDw@mail.gmail.com>

Dear All

Sameer Velankar who is coordinating Activity 1 or our 3D-BioInfo Community
has requested that I forward you the links to a short survey regarding
visualisation of structural data. Please see the details below.

It would be very helpful if you could complete this.

Many Thanks and Best Wishes
Christine


Subject: What's missing in visualising biological sequence or structure
data?

Do you visualise biological sequence or structure data?

What is missing for you in the current tools?

The ELIXIR 3D-Bioinfo community

https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Felixir-europe.org%2Fcommunities%2F3d-bioinfo__%3B!!Mih3wA!TK2-WDJ80R-3nSewEIfk2c66Jt_cRuId6ujhzjR3ZYWo4z2S_Y_jC8LqdD2vzhw%24&amp;data=02%7C01%7C%7Cce17e9af88a043dcbad508d85e2f82a7%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C637362905435683427&amp;sdata=HmQTE69VqB%2BDt99nXN5fnl9DpTDU7%2F%2FQDwh4yETTPdo%3D&amp;reserved=0


created a survey to find out what your preferences and requirements are
with respect to visualisation.

The Survey is available at
https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefense.com%2Fv3%2F__https%3A%2F%2Fforms.gle%2FQtui4nx6xrivUcaG6__%3B!!Mih3wA!TK2-WDJ80R-3nSewEIfk2c66Jt_cRuId6ujhzjR3ZYWo4z2S_Y_jC8LqJNNHj-M%24&amp;data=02%7C01%7C%7Cce17e9af88a043dcbad508d85e2f82a7%7C1faf88fea9984c5b93c9210a11d9a5c2%7C0%7C0%7C637362905435693445&amp;sdata=ZDQi7Bas5ApfItp%2BIfQBYYbDX6cIWUAzFrlhdBoOh%2BY%3D&amp;reserved=0

we would be very grateful if you could complete it before the 31st of
October.

The initial results from the survey will be presented at the online
3D-Bioinfo community meeting from 24-26/11/2020.


You're receiving this message because you're a member of the
3d-bioinfo-all-contacts group from University College London. To take part
in this conversation, reply all to this message.

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From lukas.kall at scilifelab.se  Fri Sep 25 09:05:10 2020
From: lukas.kall at scilifelab.se (=?UTF-8?Q?Lukas_K=C3=A4ll?=)
Date: Fri, 25 Sep 2020 09:05:10 +0200
Subject: [SocBiN] PhD Position in Proteogenomics at Univ. of Bergen
Message-ID: <CABy8FWW75o=4wjFn11Nrr-yH946wRmw=LG5vjbCV1TmOcTt9=g@mail.gmail.com>

Hi,

Here is an advericement of a Ph.D. position in mass spectrometry data
analysis of proteogenomics samples.

https://www.jobbnorge.no/en/available-jobs/job/193176/phd-position-4-years

Deadline for applications is set to 18th of October.

Cheers
--Lukas Käll
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From anders.andersson at scilifelab.se  Mon Sep 28 08:53:52 2020
From: anders.andersson at scilifelab.se (Anders Andersson)
Date: Mon, 28 Sep 2020 08:53:52 +0200
Subject: [SocBiN] Fwd: Tenure track bioinformatics
In-Reply-To: <b7880988-f5d5-47d5-ea18-db12a2ac7c26@io-warnemuende.de>
References: <b7880988-f5d5-47d5-ea18-db12a2ac7c26@io-warnemuende.de>
Message-ID: <CAJPQwKB+n8kZOr6XW0Ti9QhvROBPnHDH8RiLJwS5RbqzJwYixg@mail.gmail.com>

Tenure track position in bioinformatics available at the Leibniz Institute
for Baltic Sea Research Warnemuende (IOW).
More information below.
//Anders Andersson

---------- Forwarded message ---------
From: Matthias Labrenz <matthias.labrenz at io-warnemuende.de>
Date: Fri, Sep 25, 2020 at 12:58 PM
Subject: Tenure track bioinformatics
To:


Dear all,
Soon a tenure track position in the field of bioinformatics will become
available at the IOW. Do you happen to know someone who might be
interested? The candidate would be expected to establish and develop
bioinformatics tools, to apply these in marine environmental studies and
to participate in ongoing research. In more detail the following tasks
should be fulfilled:

•    Bioinformatic analysis and workflow development, especially with
regard to next generation sequencing (MetaOMICS) of environmental data
•    Introduction of students and scientists to bioinformatics and
biostatistical analysis of sequence data
•    Guidance on the use of multivariate data analysis and artificial
intelligence tools
•    Establishment of own research projects in connection with molecular
biological methods in the field of ecology, biogeochemistry or evolution
of marine organisms with focus on marine (micro-) organisms

Thanks, and all the best,

Matthias

-- 

Prof. Dr. Matthias Labrenz

Environmental Microbiology

Leibniz Institute for Baltic Sea Research Warnemuende (IOW)

Section Biological Oceanography

Seestrasse 15

18119 Rostock-Warnemuende

GERMANY


Phone: +49 (0)381 5197 378

Fax: +49 (0)381 5197 440

Email: matthias.labrenz at io-warnemuende.de

http://www.io-warnemuende.de/environmental-microbiology.html


Associate Prof. Dr. habil. at Klaipeda University

Marine Research Institute

H. Manto 84, Klaipeda LT-92294

LITHUANIA


Email:Matthias.Labrenz at ku.lt

www.corpi.ku.lt



-- 
Associate Professor
SciLifeLab
School of Biotechnology
KTH Royal Institute of Technology
Stockholm, Sweden
Webpage: https://urlproxy.sunet.se/canit/urlproxy.php?_q=aHR0cDovL2Vudmdlbi5naXRodWIuaW8v&_s=ZGVmYXVsdA%3D%3D&_c=0ce448ea&_r=c3Utc2U%3D
Email: anders.andersson at scilifelab.se
Phone: +46-8-5248-1414; +46-73-9838962
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