From Erik.Bongcam at slu.se Mon Jan 4 11:40:49 2021
From: Erik.Bongcam at slu.se (Erik Bongcam Rudloff)
Date: Mon, 4 Jan 2021 10:40:49 +0000
Subject: [SocBiN] Job position within Big Data and genetics
Message-ID: <8E41713A-BC67-4DF0-9F12-AF95C31A39FD@slu.se>
Dear colleagues,
Please distribute this job announcement among your students if there is interest.
Thanks and regards
Erik
-----------------------------------
Dr. Erik Bongcam-Rudloff
Professor of Bioinformatics
Head of SLU Bioinformatics Infrastructure (SLUBI)
Head of SGBC
SLU-Uppsala
+46-(0)72-535 55 87
+46 (0)18-67 21 21
——————————————————————————————————————————————————————
Job position within Big Data and genetics
The breeding organisation Växa Sverige is looking for someone with an academic degree in bioinformatics, IT and informatics, data techniques or similar. Växa Sverige has a comprehensive database with registrations and information about Swedish cattle. The position will cover a combination of new method development and new data usage, as well as some regular job assignments of a more routine nature, such as preparing data before the monthly breeding evaluations and calculating genomic values. Our new colleague will also be a key figure in a larger project aimed at updating the IT infrastructure regarding breeding services. In addition to the tasks mentioned above, there will be opportunities in the future for data processing and development in some of our other knowledge areas, such as animal health, epidemiology or feeding. Last day for application is 2021-01-22. More information:https://ledigajobb.se/jobb/868a88/v%C3%A4xa-sverige-s%C3%B6ker-ny-kollega-med-intresse-f%C3%B6r-genetik-och-big-data
---
När du skickar e-post till SLU så innebär detta att SLU behandlar dina personuppgifter. För att läsa mer om hur detta går till, klicka här
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From j.a.dahl at medisin.uio.no Fri Jan 8 16:41:19 2021
From: j.a.dahl at medisin.uio.no (John Arne Dahl)
Date: Fri, 8 Jan 2021 15:41:19 +0000
Subject: [SocBiN] =?windows-1252?q?Open=3A_Postdoc_in_Bioinformatics_=96_m?=
=?windows-1252?q?echanisms_of_aging_and_rejuvenation?=
Message-ID: <1610120479711.28030@medisin.uio.no>
Postdoc in Bioinformatics – aging and rejuvenation
>From the Dahl Lab, Oslo University Hospital:
We are seeking a Bioinformatician/post-doctoral fellow to study the mechanisms of aging and rejuvenation in a systematic manner.
The successful candidate will develop new algorithms and perform data analysis on large datasets from whole tissues and purified cells from young and old individuals (e.g. DNA methylation, microChIP-seq, RNA-seq, ATAC-seq, proteomics), with a particular focus on stem cell aging, rejuvenation after hematopoietic stem cell transplantation in healthy humans and cancer. Primary responsibilities are to design and conduct analysis and to develop pipelines and algorithms for large datasets and several information layers. We offer the opportunity to lead and collaborate on different research projects including clinical research and collaborate with other labs at Oslo University Hospital and internationally.
Situated at the Oslo University Hospital, Scandinavia’s largest hospital, the Dahl Laboratory is well positioned for conducting both basic and translational research using mouse and patient material.
Applications must be submitted through the official Oslo University Hospital recruitment website WebCruiter.
https://2411.webcruiter.no/Main2/Recruit/Public/4325719113?language=nb&link_source_id=0
Postdoc in Bioinformatics – aging and rejuvenation:
Enter Webcruiter ID in the search field: 4325719113
Application deadline: January 15th
(You can contact me if this deadline is too soon for you. My email is listed below).
Startup date: 01.03.2021/As soon as possible, but we are flexible. We are also flexible regarding working from a distance.
The location
We are located at the Oslo University Hospital, campus Rikshospitalet adjacent to an idyllic forest. Oslo is ranked as one of the best cities in the world to live in.
We can offer
* An ambitious and stimulating scientific environment with excellent opportunities for academic development
* Full-time three-year position
* Top modern and excellent lab facilities with a wide range of core facilities
* Attractive salary according to the guidelines from the Oslo University Hospital
* Favorable pension arrangements
* Attractive welfare arrangements, with affordable high-quality childcare available
Any questions regarding the position can be directed to:
Principal Investigator Dr. John Arne Dahl. Email: j.a.dahl at medisin.uio.no
Feel free to share :)
Best regards,
John Arne Dahl
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From daniel.fischer at luke.fi Tue Jan 12 10:39:16 2021
From: daniel.fischer at luke.fi (Fischer Daniel (Luke))
Date: Tue, 12 Jan 2021 09:39:16 +0000
Subject: [SocBiN] Senior Specialist or Research Scientist position,
Bioinformatics
Message-ID: <785e64c6955b4a748fa803169a9641ba@C119S212VM039.msvyvi.vaha.local>
Hello,
There is a permanent position at the Natural Resources Institute Finland (Luke) / Luonnonvarakeskus for a Senior Specialist or Research Scientist in Bioinformatics open! If you would like to work with us, have a look at it here:
https://www.valtiolle.fi/en-US/vacancy?id=30-46-2021
Short description of the position:
The person works in Natural Resources Institute Finland (Luke) as a Bioinformatician (Senior Specialist, Bioinformatics or Research Scientist, Bioinformatics). Tasks include participation in planning new research projects and participation in execution of research projects as a researcher specialized in bioinformatics. The person can also lead projects and apply for project funding. The position requires the person to be involved in scientific writing and publishing as an author. The person is expected to actively participate in developing field of bioinformatics in Luke.
The person should preferably work in Helsinki, Jokioinen, Oulu, Joensuu or Turku.
For more details, please follow the link given above.
Best wishes from Finland,
Daniel
From Ola.Spjuth at farmbio.uu.se Mon Jan 11 16:56:07 2021
From: Ola.Spjuth at farmbio.uu.se (Ola Spjuth)
Date: Mon, 11 Jan 2021 15:56:07 +0000
Subject: [SocBiN] 3 open positions at Uppsala University
Message-ID: <15C6EECC-7CFD-42F0-B774-DD0CB876FB1B@farmbio.uu.se>
I have 3 open positions (2 PhD and 1 Postdoc) in my research group (www.pharmb.io) at Uppsala University to expand our robotized lab towards autonomous phenomics with applications in precision cancer medicine. If you are interested in a combination of AI, lab automation and cell profiling with high-content microscopy imaging to develop efficient drug combination therapies, then have a look at these positions:
- Position 1: PhD Student in Pharmaceutical Science with a focus on automated phenotypic drug profiling
- Position 2: PhD student in pharmaceutical bioinformatics with a focus on analysis of high-content imaging with AI
- Position 3: Postdoc with a focus on analysis of high-content imaging with AI
Read more at: https://pharmb.io/blog/open-positions-precision-cancer-medicine-2021/
Ola
--
Ola Spjuth, Professor
Department of Pharmaceutical Biosciences
Director of Studies, Pharmaceutical Bioinformatics
Box 591, Uppsala University, Uppsala, Sweden
Email: ola.spjuth at farmbio.uu.se
Ph: +46 (0)70 425 06 28
Web: https://pharmb.io
N?r du har kontakt med oss p? Uppsala universitet med e-post s? inneb?r det att vi behandlar dina personuppgifter. F?r att l?sa mer om hur vi g?r det kan du l?sa h?r: http://www.uu.se/om-uu/dataskydd-personuppgifter/
E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy
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From lukas.kall at scilifelab.se Tue Jan 12 12:50:48 2021
From: lukas.kall at scilifelab.se (=?UTF-8?Q?Lukas_K=C3=A4ll?=)
Date: Tue, 12 Jan 2021 12:50:48 +0100
Subject: [SocBiN] Fwd: ML/Bioinformatics Researcher Positions Available at
NEC Labs America - Princeton
Message-ID:
---------- Forwarded message ---------
From: Martin Renqiang Min
Date: Mon, Jan 11, 2021 at 10:07 AM
Subject: ML/Bioinformatics Researcher Positions Available at NEC Labs
America - Princeton
The Machine Learning Group of NEC Labs America - Princeton has several
ML/Bioinformatics researcher positions available. Could you please forward
the following job ad to relevant graduate students? Thank you very much.
TITLE Researcher
LOCATION Princeton, NJ
DEPARTMENT Machine Learning
DESCRIPTION
The Machine Learning Department in Princeton, NJ, has openings for
researchers
with a passion for developing the next generation of machine intelligence.
Expertise in machine learning with a proven track record of original
research as
well as a keen sense for developing practical applications are
prerequisites for
this position.
The Machine Learning Department has been at the forefront of research in
such
areas as deep learning, support vector machines, and semantic analysis for
almost two decades. Many technologies developed in our group have been
released
as innovative products and services of NEC, such as systems for recruiting,
surveillance, inspection of manufactured goods, and digital pathology. In
addition to contributing to NEC’s business, our research is published in
premier
venues. Among the challenges we are tackling now are, how to move machine
learning to more abstract reasoning, and how this can enable new
applications in
smart manufacturing, safe cities, and personalized heath care.
http://www.nec-labs.com/research-departments/machine-learning/machine-learning-home
POSITION REQUIREMENTS
• PhD in computer science, electrical engineering, bioinformatics,
statistics,
or equivalent
• Research experience in machine learning with strong publication record
• Strong algorithm and numeric computation background
• Programming experience in Python, C++, or other languages
• Experience with deep learning libraries and platforms a plus, e.g.
PyTorch,
TensorFlow, or Caffe
Application Link: https://www.appone.com/MainInfoReq.asp?R_ID=3206183
Best regards,
Martin Renqiang Min
Machine Learning Group
NEC Laboratories America
http://www.cs.toronto.edu/~cuty
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From Ola.Spjuth at farmbio.uu.se Tue Jan 12 14:26:21 2021
From: Ola.Spjuth at farmbio.uu.se (Ola Spjuth)
Date: Tue, 12 Jan 2021 13:26:21 +0000
Subject: [SocBiN] 3 open positions at Uppsala University
Message-ID:
I have 3 open positions (2 PhD and 1 Postdoc) in my research group (www.pharmb.io) at Uppsala University to expand our robotized lab towards autonomous phenomics with applications in precision cancer medicine. If you are interested in a combination of AI, lab automation and cell profiling with high-content microscopy imaging to develop efficient drug combination therapies, then have a look at these positions:
- Position 1: PhD Student in Pharmaceutical Science with a focus on automated phenotypic drug profiling
- Position 2: PhD student in pharmaceutical bioinformatics with a focus on analysis of high-content imaging with AI
- Position 3: Postdoc with a focus on analysis of high-content imaging with AI
Read more at: https://pharmb.io/blog/open-positions-precision-cancer-medicine-2021/
--
Ola Spjuth, Professor
Department of Pharmaceutical Biosciences
Director of Studies, Pharmaceutical Bioinformatics
Box 591, Uppsala University, Uppsala, Sweden
Email: ola.spjuth at farmbio.uu.se
Ph: +46 (0)70 425 06 28
Web: https://pharmb.io
N?r du har kontakt med oss p? Uppsala universitet med e-post s? inneb?r det att vi behandlar dina personuppgifter. F?r att l?sa mer om hur vi g?r det kan du l?sa h?r: http://www.uu.se/om-uu/dataskydd-personuppgifter/
E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy
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From Victor.Renault at curie.fr Tue Jan 19 17:03:05 2021
From: Victor.Renault at curie.fr (Renault Victor)
Date: Tue, 19 Jan 2021 16:03:05 +0000
Subject: [SocBiN] Bioinformatics Engineer (6 months) in Clinical
Bioinformatics, Curie Institute, Paris, France
In-Reply-To: <027bcc0d31c548b5a725b5f5d428f0e1@curie.fr>
References: <361726eb762b45db8f69af168dab34c6@curie.fr>,
<027bcc0d31c548b5a725b5f5d428f0e1@curie.fr>
Message-ID:
Hello,
the following position is available at Curie Institute in Paris from April 2021.
Thank you in advance,
best regards,
Victor Renault
Bioinformatics Engineer (6 months) in Clinical Bioinformatics, Curie Institute, Paris, France
Mission:
In prevision of a maternity leave, a fixed-term contract of 6 months is available from April 2021 within the Clinical Bioinformatics Group included inside the Diagnostic and Theranostic Medecine Division of Curie Institute in Paris, France.
Main activities:
* Implementation of analysis pipelines
* Developpement of custom tools for clinical diagnostic
* Calibration and validation of analysis pipelines
* Help to functionally interpret results using various databases
* Contribute to the evolution and maintenance of diagnostic pipelines: updates, bug reporting, validations
* Contribute to research projects associated with clinical trials
* Regular progress meetings with biologists
* Technological watch
Required skills:
* Proficient with Unix/Linux environment
* Proficient in at least of the following programming languages (ideally with experience with several of them): python, java, R or any other object-oriented programming language
* Good knowledge of standard bioinformatics tools for analyzing and interpreting Next Generation Sequencing data (DNA and RNAseq)
* Have an interest for interactions with biologists
* Rigorous, dynamic, autonomous
* Excellent team work
Desired skills:
* Good knowledge in algorithmics
* Code versioning using git
* Proficient in English (oral and written)
* Some skills in one or several of the following is highly advantageous: usage of calculation cluster (SGE / SLURM / LSF / MOAB, etc.), experience with distributed programming, usage of GPU, experience in machine learning / deep learning
* Some knowledge in oncology is advantageous
Diploma:
* A PhD or MSc in Bioinformatics
* A first experience Next Generation data analysis is preferred
In order to apply, please send an email with your resume and a cover letter to bioinfo-clinique[AT]curie.fr
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From clu at intomics.com Tue Jan 19 17:13:24 2021
From: clu at intomics.com (Claus Lundegaard)
Date: Tue, 19 Jan 2021 17:13:24 +0100
Subject: [SocBiN] Bioinformatics specialist
Message-ID: <5DE72DFB-BCC5-4C43-9F89-FB793CB274E5@intomics.com>
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From vicente.pelechano.garcia at ki.se Tue Jan 19 19:40:24 2021
From: vicente.pelechano.garcia at ki.se (Vicente Pelechano Garcia)
Date: Tue, 19 Jan 2021 18:40:24 +0000
Subject: [SocBiN] Proteomics-Genomics Bioinformatician position in Berlin
In-Reply-To: <1B396D69-DFFC-4857-A857-D231444891EC@scilifelab.se>
References: <2F14E2CD-BD89-448F-8EEC-F08658922D8E@mdc-berlin.de>
<1B396D69-DFFC-4857-A857-D231444891EC@scilifelab.se>
Message-ID: <5CB19BAC-3938-42B5-AE4C-6290C7954E64@ki.se>
Dear colleagues,
We are looking for a data scientist / bioinformatician interested to work at the interface of proteomics and genomics. The position is shared between the Piazza laboratory (https://www.mdc-berlin.de/piazza) and the proteomics platform led by Philipp Mertins at the MDC. The job is funded directly from the Helmholtz association and it has long-term prospectives ( = possibility of a permanent contract) . Basically…. One of those very rare positions in academia.
The advertisement is open. Apply here: https://jobrxiv.org/job/mdc-berlin-27778-staff-scientist-phd-post-doctoral-position-in-bioinformatics-100-proteomics-and-genomics/
For further details contact:
ilaria.piazza at mdc-berlin.de
Thank you very much
Dr. Ilaria Piazza
Max Delbrück Center for Molecular Medicine (MDC) in der Helmholtz-Gemeinschaft
Building 31.1. 3rd Floor, Room 3001.
Robert-Rössle-Straße 10
Tel: +49 30 9406 3772
13125 Berlin, Germany.
ilaria.piazza at mdc-berlin.de
IPlab.mdc at gmail.com
www.thewittysquare.eu
Twitter: @theWittySquare
- * - *- * - *- * - *- * - *- * - *-
- * - *- * - *- * - *- * - *- * - *-
När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter.
Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI’s processing of personal data here.
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From shilpa.garg2k7 at gmail.com Thu Jan 21 15:44:21 2021
From: shilpa.garg2k7 at gmail.com (shilpa)
Date: Thu, 21 Jan 2021 15:44:21 +0100
Subject: [SocBiN] Bioinformatics/CS postdoc job position
In-Reply-To:
References:
Message-ID:
Hello,
I am Shilpa Garg, an assistant professor at University of Copenhagen. My
lab is looking for a postdoc who is interested in novel sophisticated
bioinformatics/computer science models to integrate complex biological
datasets and their applications to diseases and evolution.
Interested candidates are encouraged to apply here:
https://employment.ku.dk/faculty/?show=153363. *The deadline is Feb 14.*
Thank you.
--
Regards,
Shilpa
--
Regards,
Shilpa
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From shilpa.garg2k7 at gmail.com Thu Jan 21 15:44:21 2021
From: shilpa.garg2k7 at gmail.com (shilpa)
Date: Thu, 21 Jan 2021 15:44:21 +0100
Subject: [SocBiN] Bioinformatics/CS postdoc job position
In-Reply-To:
References:
Message-ID:
Hello,
I am Shilpa Garg, an assistant professor at University of Copenhagen. My
lab is looking for a postdoc who is interested in novel sophisticated
bioinformatics/computer science models to integrate complex biological
datasets and their applications to diseases and evolution.
Interested candidates are encouraged to apply here:
https://employment.ku.dk/faculty/?show=153363. *The deadline is Feb 14.*
Thank you.
--
Regards,
Shilpa
--
Regards,
Shilpa
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From Tatiana.Starikovskaya at ens.fr Thu Jan 21 21:06:41 2021
From: Tatiana.Starikovskaya at ens.fr (Tatiana Starikovskaya)
Date: Thu, 21 Jan 2021 21:06:41 +0100
Subject: [SocBiN] Final CFP: 32nd Annual Symposium on Combinatorial Pattern
Matching (CPM 2021)
Message-ID: <4D1E0A29-DFFC-462E-B14C-8F8F05BB7F35@di.ens.fr>
(Apologies for multiple copies)
The Annual Symposium on Combinatorial Pattern Matching (CPM) has by now over 30 years of tradition and is considered to be the leading conference for the community working on Stringology. The objective of the annual CPM meetings is to provide an international forum for research in combinatorial pattern matching and related applications such as computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition.
The 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021) will be held in Wroclaw, Poland, July 5-7, 2021 in a hybrid mode (with reduced fees for remote participants).
WEBSITE OF THE CONFERENCE: http://cpm2021.ii.uni.wroc.pl/
DEADLINE: Friday, January 29, 2021, anywhere on Earth. By multiple requests related to COVID-19 pandemic, re-submission of papers uploaded before the deadline will be allowed until Friday, February 5, 2021.
================================
CALL FOR PAPERS
Papers on original research unpublished elsewhere in all areas related
to combinatorial pattern matching and its applications are welcome.
The proceedings will be published by LIPIcs (of Dagstuhl).
TOPICS OF INTEREST
Papers are solicited on, but not limited to, the following topics:
Bioinformatics and computational biology
Coding and data compression
Combinatorics on words
Data mining
Information retrieval
Natural language processing
Pattern discovery
String algorithms
String processing in databases
Symbolic computing
Text searching and indexing
KEYNOTE SPEAKERS
Hideo Bannai (Tokyo Medical and Dental University, Japan)
Michal Koucký (Charles University, Czech Republic)
Nadia Pisanti (University of Pisa, Italy & Erable Team INRIA, France)
HIGHLIGHT SPEAKERS
Panagiotis Charalampopoulos (Interdisciplinary Center Herzliya)
Travis Gagie (Dalhousie University)
STUDENT SUMMER SCHOOL
Martin Farach-Colton (Rutgers University)
Jakub Radoszewski (University of Warsaw)
SUBMISSION
Submission is through the EasyChair conference system:
https://easychair.org/conferences/?conf=cpm2021
SUBMISSION FORMAT
The authors should submit an extended abstract not exceeding 15 pages,
including figures, title, authors, affiliations, e-mail addresses, and
a short abstract. The authors are required to use the LaTeX style file
supplied by Dagstuhl (LIPIcs) with the original settings (including
the font size and the margins). References will not be counted in the
page limit.
At least one author of an accepted paper is expected to present the
paper at the conference as a registered participant.
Papers must be submitted as a single file in PDF format.
Additional material intended for the referee but not for publication
in the final version—for example details of proofs—may be placed in a
clearly marked appendix that is not included in the page limit.
Papers submitted for review should represent original, previously
unpublished work. At the time the extended abstract is submitted to
CPM, and for the entire review period, the paper (or essentially the
same paper) should not be under review by any other conference with
published proceedings or by a scientific journal.
COVID-19
We are carefully watching the situation with the Covid-19 pandemic. We
hope to conduct a physical event, but we will certainly offer the
possibility of remote participation (with a lower
registration fee) for those who are unable to come due to travel
restrictions or other circumstances. In the worst case, we will move
the event online but are not planning to postpone it.
PROGRAM COMMITTEE MEMBERS
Golnaz Badkobeh (Goldsmiths University of London, UK)
Frédérique Bassino (University Paris 13, France)
Christina Boucher (University of Florida, USA)
Laurent Bulteau (CNRS and Université Paris-Est Marne-la-Vallée, France)
Raphaël Clifford (University of Bristol, UK)
Fabio Cunial (MPI-CBG, Germany)
Funda Ergun (Indiana University, USA)
Paweł Gawrychowski (University of Wrocław, Poland), Co-Chair
Inge Li Gørtz (Technical University of Denmark)
Stepan Holub (Charles University in Prague, Czech Republic)
Tomohiro I (Kyushu Institute of Technology, Japan)
Shunsuke Inenaga (Kyushu University, Japan)
Tomasz Kociumaka (University of California, Berkeley, USA)
Christian Komusiewicz (Philipps-Universität Marburg, Germany)
Dmitry Kosolobov (Ural Federal University, Russia)
Gad M. Landau (University of Haifa, Israel)
Florin Manea (University of Göttingen, Germany)
Pierre Peterlongo (INRIA, France)
Cinzia Pizzi (University of Padova, Italy)
Leena Salmela (University of Helsinki, Finland)
Srinivasa Rao Satti (Seoul National University, South Korea)
Marinella Sciortino (University of Palermo, Italy)
Braha-Riva Shalom (Shenkar College of Engineering and Design, Israel)
Tatiana Starikovskaya (École normale supérieure, France), Co-Chair
Yasuo Tabei (RIKEN, Japan)
Tomasz Waleń (University of Warsaw, Poland)
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From vignesh.bioinfo at gmail.com Fri Jan 22 12:27:33 2021
From: vignesh.bioinfo at gmail.com (vigneshwari subramanian)
Date: Fri, 22 Jan 2021 12:27:33 +0100
Subject: [SocBiN] Fwd: Postdoc in Machine Learning for Single-cell Genomics
in Cancer
In-Reply-To:
References:
Message-ID:
Deal all,
Please find below a great opportunity for those interested in Machine
Learning and Single Cell Genomics.
Best regards,
Vigneshwari Subramanian
---------- Forwarded message ---------
From: Julio Saez Rodriguez
Date: Mon, Jan 18, 2021 at 4:52 PM
Subject: Postdoc in Machine Learning for Single-cell Genomics in Cancer
To: Julio Saez Rodriguez
Dear Colleagues,
We are looking for a postdoc to develop deep learning methods for
single-cell genomics in cancer. The position is part of a collaboration
with the groups of Oliver Stegle and Karsten Rippe (DFKZ), Fabian Theis
(Helmholtz Center Munich) and Marc Raab (Heidelberg University Hospital).
The main methodological focus will be to include biological knowledge on
machine learning methods developed closely with the Theis and Stegle groups.
There is no strict deadline, but priority will be given to applications by
February 1st. Starting date is aimed for March 2021or soon thereafter.
Candidates
should email their CV (including names of three references) and a letter of
interest to jobs.saez {at} bioquant.uni-heidelberg.de.
More information here:
https://jobrxiv.org/job/heidelberg-university-hospital-27778-postdoc-in-machine-learning-for-single-cell-genomics-in-cancer/
I would be very grateful if you could forward this message to people
that might be interested
and post it within your institutions.
Many thanks in advance.
Best wishes,
Julio Saez-Rodriguez
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From esa.pitkanen at cs.helsinki.fi Sun Jan 24 15:39:48 2021
From: esa.pitkanen at cs.helsinki.fi (=?UTF-8?Q?Esa_Pitk=c3=a4nen?=)
Date: Sun, 24 Jan 2021 16:39:48 +0200
Subject: [SocBiN] Postdoc position in hematological single-cell genomics
Message-ID: <26130252-7370-abdb-b13f-d830bf9a66ca@cs.helsinki.fi>
Dear colleagues,
we have an open position in Helsinki for a postdoc in hematological
single-cell genomics and machine learning. Students with the PhD degree
close to completion are encouraged to apply. Please apply at latest Feb 19.
More info at
https://www.helsinki.fi/en/open-positions/postdoctoral-fellow-in-hematological-single-cell-genomics
- feel free to contact me if you have questions, and please forward this
info to suitable candidates.
Kind regards,
Esa
-- Esa Pitkänen, PhD, FIMM-EMBL Group Leader Institute for Molecular
Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine
Biomedicum Helsinki 2U P.O. Box 20 (Tukholmankatu 8) FI-00014 University
of Helsinki Finland
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From prash at bioclues.org Mon Jan 25 09:57:47 2021
From: prash at bioclues.org (Prash)
Date: Mon, 25 Jan 2021 14:27:47 +0530
Subject: [SocBiN] Postdoc in Machine Learning for Single-cell Genomics in
Cancer
In-Reply-To:
References:
Message-ID:
Courtesy of socbin
> Dearl all,
> Please find below a great opportunity for those interested in Machine
> Learning and Single Cell Genomics.
>
> Best regards,
> Vigneshwari Subramanian
>
> ---------- Forwarded message ---------
> From: Julio Saez Rodriguez
> Date: Mon, Jan 18, 2021 at 4:52 PM
> Subject: Postdoc in Machine Learning for Single-cell Genomics in Cancer
> To: Julio Saez Rodriguez
>
>
> Dear Colleagues,
>
> We are looking for a postdoc to develop deep learning methods for
> single-cell genomics in cancer. The position is part of a collaboration
> with the groups of Oliver Stegle and Karsten Rippe (DFKZ), Fabian Theis
> (Helmholtz Center Munich) and Marc Raab (Heidelberg University Hospital).
> The main methodological focus will be to include biological knowledge on
> machine learning methods developed closely with the Theis and Stegle groups.
>
> There is no strict deadline, but priority will be given to applications by
> February 1st. Starting date is aimed for March 2021or soon thereafter. Candidates
> should email their CV (including names of three references) and a letter of
> interest to jobs.saez {at} bioquant.uni-heidelberg.de.
>
> More information here:
> https://jobrxiv.org/job/heidelberg-university-hospital-27778-postdoc-in-machine-learning-for-single-cell-genomics-in-cancer/
>
> I would be very grateful if you could forward this message to people that might be interested
> and post it within your institutions.
>
> Many thanks in advance.
>
> Best wishes,
>
> Julio Saez-Rodriguez
>
>
--
Prashanth N Suravajhala, Ph.D.
Senior Scientist, Systems Biology
Department of Biotechnology and Bioinformatics
Birla Institute of Scientific Research
Statue Circle, Jaipur 302001 RJ, India
Telephone: (work) +91-141-2385094. Extension 308
E mail: prash[AT]bisr[DOT]res[DOT]in
Home page: http://www.bioinformatics.org/wiki/Prash
Twitter: @prashbio
"Each problem that I solved became a rule, which served afterwards to solve
other problems." ~ Rene Descartes
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From michael.hiller at senckenberg.de Thu Jan 28 13:55:13 2021
From: michael.hiller at senckenberg.de (Michael Hiller)
Date: Thu, 28 Jan 2021 13:55:13 +0100
Subject: [SocBiN] Postdoc Position in Comparative Genomics at Senckenberg
Frankfurt
Message-ID: <5EC64CE9-44F6-4A4C-8573-78F3CE24BE69@senckenberg.de>
The Hiller Lab at the LOEWE Center for Translational Biodiversity Genomics (TBG) in Frankfurt, Germany is looking for an ambitious Postdoc to investigate the genomic basis of phenotypic differences between vertebrates.
Project
The project aims at linking phenotypic adaptations to genomic differences, which is a central goal in the genomics era. The postdoc is expected to capitalize on a powerful repertoire of Forward Genomic and other methods as well as genome alignments and comparative data for several hundred mammals and birds that the lab has generated. A large list of interesting adaptations including metabolic, physiological and morphological traits in bats, dolphins, other mammals and vertebrates is available to be studied, and choices can be influenced by the preference of the postdoc.
Our lab
The mission of our group is to understand how nature's fascinating phenotypic diversity has evolved and how it is encoded in the genome. Work in the lab includes genome sequencing and assembly, genome alignment and annotation, development and application of comparative genomic methods to discover differences in genes and cis-regulatory elements, and the use of statistical approaches to link phenotypic to genomic changes [1-8].
Our lab is part of TBG (https://tbg.senckenberg.de/ ) and Senckenberg Research Society, and is based near the city center of Frankfurt am Main, Germany. The TBG provides access to cutting-edge computational infrastructure (HPC, genome browser) and lab facilities to sequence genomes of diverse creatures. English is the working language in our lab. Frankfurt is a vibrant and highly-international city at the heart of Europe that combines a skyscraper skyline with ample park and green areas.
Requirements
Applicants should have a degree in bioinformatics/computational biology, genomics or a related area, and a strong publication record. Solid programming skills in a Linux environment and experience with shell scripting and Unix tools are required. Previous experience in large-scale comparative genomic data analysis is an advantage.
How to apply
If interested, please email (i) your CV including publication list and contact information for at least two references and (ii) a summary of previous research experience (max 1 page) to Michael Hiller (Michael.Hiller at senckenberg.de). Further information: https://tbg.senckenberg.de/personen/hiller/
The position is fully-funded. Salary and benefits are according to TV-H E13 100%. The position will be initially for 2 years, but funding is available to extend it further. The employer is the Senckenberg Society for Nature Research in Frankfurt am Main. Senckenberg supports equal opportunity of men and women and therefore strongly invites women to apply. Equally qualified handicapped applicants will be given preference.
Application deadline is February 26th 2021. The position is available immediately and the search continues until the position has been filled.
Recent publications
[1] Jebb et al. Six reference-quality genomes reveal evolution of bat adaptations. Nature, 583, 578–584, 2020
[2] Huelsmann et al. Genes lost during the transition from land to water in cetaceans highlight genomic changes associated with aquatic adaptations. Science Adv, 5(9), eaaw6671, 2019
[3] Hecker et al. Convergent gene losses illuminate metabolic and physiological changes in herbivores and carnivores. PNAS, 116(8), 3036-3041, 2019
[4] Roscito et al. Phenotype loss is associated with widespread divergence of the gene regulatory landscape in evolution. Nature Communications, 9:4737, 2018
[5] Langer et al. REforge associates transcription factor binding site divergence in regulatory elements with phenotypic differences between species. MBE, 35(12), 3027–3040, 2018
[6] Lee et al. Molecular parallelism in fast-twitch muscle proteins in echolocating mammals. Science Adv, 4(9), eaat9660, 2018
[7] Sharma et al. A genomics approach reveals insights into the importance of gene losses for mammalian adaptations. Nature Communications, 9(1), 1215, 2018
[8] Nowoshilow et al. The axolotl genome and the evolution of key tissue formation regulators. Nature, 554(7690), 50-55, 2018
--
Michael Hiller, PhD
Professor of Comparative Genomics
LOEWE Centre for Translational Biodiversity Genomics,
Senckenberg Society for Nature Research & Goethe University,
Frankfurt am Main, Germany
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