From olam at oslomet.no Wed Jun 2 08:43:07 2021 From: olam at oslomet.no (Ole Herman Ambur) Date: Wed, 2 Jun 2021 06:43:07 +0000 Subject: [SocBiN] Fwd: Posting Ph.D position at OsloMet References: Message-ID: Fra: Ole Herman Ambur Dato: 2. juni 2021 kl. 08:32:20 CEST Til: socbin-at-sbc.su.se at lists.su.se Emne: Posting Ph.D position  Please find call for applicants for Ph.D position in my group relevant for the list subscribers. Yours sincerely, Ole Herman Ambur https://www.oslomet.no/en/work/job-openings/phd-fellowship-position-in-microbial-genomics -------------- next part -------------- An HTML attachment was scrubbed... URL: From roland.nilsson at ki.se Tue Jun 1 09:18:48 2021 From: roland.nilsson at ki.se (Roland Nilsson) Date: Tue, 1 Jun 2021 07:18:48 +0000 Subject: [SocBiN] Postdoc position in computational metabolism at Karolinska Institutet Message-ID: Hi all, please forward to anyone that might be interested. We're looking for a talented and independent postdoc to join our research group at Karolinska Institutet. Our goal is to understand human metabolism using modern mass spectrometry methods and computational techniques, with biomedical applications in metabolic disorders as well as cancer metabolism. If you're interested in algorithm development, statistical models and mining rich, complex biological data sets, this position could be the opportunity for you! Several possible projects available, both in-house and within national and international collaborations. Find out more and apply online by June 11th at the latest: https://ki.varbi.com/what:job/jobID:402303/ Best, Roland --- Roland Nilsson, Ph.D roland.nilsson at ki.se Assistant professor +46 722 334580 Dept. of Medicine (Solna) Center for Molecular Medicine Karolinska Institutet Stockholm, Sweden N?r du skickar e-post till Karolinska Institutet (KI) inneb?r detta att KI kommer att behandla dina personuppgifter. H?r finns information om hur KI behandlar personuppgifter. Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI's processing of personal data here. -------------- next part -------------- An HTML attachment was scrubbed... URL: From sofia.kossida at igh.cnrs.fr Wed Jun 2 11:23:52 2021 From: sofia.kossida at igh.cnrs.fr (Sofia KOSSIDA) Date: Wed, 2 Jun 2021 09:23:52 +0000 Subject: [SocBiN] PhD position in immunogenetics & machine learning in IMGT, Montpellier, France Message-ID: Hello, Document attached for any candidate interested in the topic. Best regards, Sofia Professor Sofia KOSSIDA University of Montpellier IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org IMGT, IGH, UMR 9002 - CNRS - UM 15 Av Charles Flahault 34090 MONTPELLIER, FRANCE e-mail : Sofia.Kossida at igh.cnrs.fr Doctoral School CBS2 https://edcbs2.umontpellier.fr/ [https://www.umontpellier.fr/wp-content/uploads/2014/12/Logo_MUSE_Original.jpg][https://edcbs2.umontpellier.fr/images/logo2.jpg][logo IMGT] From: SocBiN On Behalf Of Roland Nilsson Sent: 01 June 2021 09:19 To: socbin at socbin.org Subject: [SocBiN] Postdoc position in computational metabolism at Karolinska Institutet Hi all, please forward to anyone that might be interested. We're looking for a talented and independent postdoc to join our research group at Karolinska Institutet. Our goal is to understand human metabolism using modern mass spectrometry methods and computational techniques, with biomedical applications in metabolic disorders as well as cancer metabolism. If you're interested in algorithm development, statistical models and mining rich, complex biological data sets, this position could be the opportunity for you! Several possible projects available, both in-house and within national and international collaborations. Find out more and apply online by June 11th at the latest: https://ki.varbi.com/what:job/jobID:402303/ Best, Roland --- Roland Nilsson, Ph.D roland.nilsson at ki.se Assistant professor +46 722 334580 Dept. of Medicine (Solna) Center for Molecular Medicine Karolinska Institutet Stockholm, Sweden När du skickar e-post till Karolinska Institutet (KI) innebär detta att KI kommer att behandla dina personuppgifter. Här finns information om hur KI behandlar personuppgifter. Sending email to Karolinska Institutet (KI) will result in KI processing your personal data. You can read more about KI's processing of personal data here. -------------- next part -------------- An HTML attachment was scrubbed... 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Name: IMGT MabImprove PhD thesis 010621.pdf Type: application/pdf Size: 309983 bytes Desc: IMGT MabImprove PhD thesis 010621.pdf URL: From Erik.Bongcam at slu.se Fri Jun 4 13:54:42 2021 From: Erik.Bongcam at slu.se (Erik Bongcam Rudloff) Date: Fri, 4 Jun 2021 11:54:42 +0000 Subject: [SocBiN] Senior Lecturer/Associate professor of Bioinformatics Message-ID: <1622807682489.73466@slu.se> Applications are invited for a permanent position as Senior Lecturer of bioinformatics.? The position includes teaching in bioinformatics at the basic and advanced level and research in the field of bioinformatics. Teaching includes course management, educational development, theoretical and practical teaching and examination. One of the most important tasks for the senior lecturer will be to teach at the Masters and PhD Bioinformatics courses. ? The Senior Lecturer will also contribute to the development of the subject bioinformatics. This includes own research in bioinformatics in areas relevant to the VH-faculty and also SLU, and supervision of post graduate students.? Assignments and administrative work at departmental and faculty level will be included. The senior lecturer will also be involved in SLU's Bioinformatics Infrastructure (SLUBI). https://www.slu.se/en/about-slu/work-at-slu/jobs-vacancies/? Regards Erik --- När du skickar e-post till SLU så innebär detta att SLU behandlar dina personuppgifter. För att läsa mer om hur detta går till, klicka här E-mailing SLU will result in SLU processing your personal data. For more information on how this is done, click here -------------- next part -------------- An HTML attachment was scrubbed... URL: From Tatiana.Starikovskaya at ens.fr Mon Jun 7 19:56:37 2021 From: Tatiana.Starikovskaya at ens.fr (Tatiana Starikovskaya) Date: Mon, 7 Jun 2021 19:56:37 +0200 Subject: [SocBiN] =?utf-8?q?CPM_2021_Call_for_PARTICIPATION=3A_5-7_July=2C?= =?utf-8?q?_2021=2C_Wroc=C5=82aw=2C_Poland_=28hybrid=29?= Message-ID: ======================================= === CPM 2021 Call for PARTICIPATION === ======================================= 32nd Annual Symposium on Combinatorial Pattern Matching Wrocław, Poland, July 5-7, 2021 https://cpm2021.ii.uni.wroc.pl/ The Annual Symposium on Combinatorial Pattern Matching (CPM) has by now over 30 years of tradition and is considered to be the leading conference for the community working on Stringology. The objective of the annual CPM meetings is to provide an international forum for research in combinatorial pattern matching and related applications such as computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition. The conference will be preceded by a student summer school on July 4, 2021. Due to the Covid-19 pandemic, the conference will be run in a hybrid mode: online over Zoom and offline in Wrocław, both with NO participation fees. Please register here: https://cpm2021.ii.uni.wroc.pl/registration.shtml (this allows you to participate in the summer school as well). At the moment, citizens/residents of EU/EFTA countries and UK/Ireland can freely enter Poland, and citizens/residents of Japan, Canada, South Korea, Australia, Israel are allowed to enter by air. There is no quarantine with vaccine certificate or negative test (antigen or RT-PCR, before or after arrival). The exact rules are complicated and keep changing, so we strongly advise verifying them on your own. We will be happy to answer any questions concerning the local arrangements at cpm2021 at cs.uni.wroc.pl. KEYNOTE SPEAKERS Hideo Bannai (Tokyo Medical and Dental University, Japan) Michal Koucký (Charles University, Czech Republic) Nadia Pisanti (University of Pisa, Italy & Erable Team INRIA, France) SUMMER SCHOOL SPEAKERS Martin Farach-Colton (Rutgers University) Jakub Radoszewski (University of Warsaw) HIGHLIGHT SPEAKERS Panagiotis Charalampopoulos (Interdisciplinary Center Herzliya) Travis Gagie (Dalhousie University) ACCEPTED PAPERS https://cpm2021.ii.uni.wroc.pl/accepted.shtml From arne at bioinfo.se Mon Jun 14 20:08:56 2021 From: arne at bioinfo.se (Arne Elofsson) Date: Mon, 14 Jun 2021 20:08:56 +0200 Subject: [SocBiN] Ddls positions at Chalmers Message-ID: Assistant professor tenure track positions at Chalmers, in data-driven life science (cell and molecular biology, and precision medicine). Top-notch packages! Plz, spread and apply! Welcome!! https://t.co/74KrxjK5aN https://t.co/o2i6Q34kFu -------------- next part -------------- An HTML attachment was scrubbed... URL: From arne at bioinfo.se Tue Jun 15 12:02:14 2021 From: arne at bioinfo.se (Arne Elofsson) Date: Tue, 15 Jun 2021 12:02:14 +0200 Subject: [SocBiN] DDLS position at KTH Message-ID: Very well funded and nice positions, if you have the possibility please apply *Assistant professor in data-driven cell and molecular biology:* https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:406593/where:4/ Yours Arne ----------------------------------------- Arne Elofsson Science for Life Laboratory Tel:+46-(0)70 695 1045 Stockholm University http://bioinfo.se/ Box 1031, Email: arne at bioinfo.se 17121 Solna, Sweden Twitter: https://twitter.com/arneelof Scholar: http://scholar.google.se/citations?user=s3OCM3AAAAAJ ORCID: 0000-0002-7115-9751 -------------- next part -------------- An HTML attachment was scrubbed... URL: From marcela.davila at gu.se Wed Jun 16 09:31:15 2021 From: marcela.davila at gu.se (Marcela Davila) Date: Wed, 16 Jun 2021 07:31:15 +0000 Subject: [SocBiN] =?windows-1252?q?F=F6r_spridning_i_n=E4tverk_-_recruitme?= =?windows-1252?q?nt_of_DDLS_Fellows_to_University_of_Gothenburg?= In-Reply-To: References: Message-ID: University of Gothenburg is part of the newly started national program for data-driven life science (DDLS). This 12-year initiative is funded with SEK 3.1 billion from the Knut and Alice Wallenberg Foundation and is hosted by SciLifeLab. The purpose of the program is to train the next generation scientists of life science, to create a strong computational and data science base, and to strengthen the competencies in today’s research society within data driven life sciences. Since launching the program in January 2021 many new activities have been initiated and achieved in collaboration with the 11 participating Swedish universities and organizations. One of the first steps is recruitment of early career PIs (DDLS-fellows) and University of Gothenburg is currently recruiting: Associate Senior Lecturer in data-driven precision medicine and diagnostics Associate Senior Lecturer in data-driven epidemiology and infection biology Last day to apply is September 5th. The announcements can also be reached via the webpage of Wallenberg Centre for Molecular and Translational Medicine Within the program, you will be given the possibility to develop your full potential as a leading independent scientist in a flourishing academic environment linked to Sahlgrenska University Hospital, AstraZeneca and Chalmers University of Technology in Gothenburg. You will also become part of the local scientific environment and community of the Wallenberg Centre for Molecular and Translational Medicine, WCMTM, and nationally within the DDLS program. Warm welcome with your application! _____________________________________________________________________ ______________________________________________ Julia Grönros, PhD Research coordinator at Wallenberg Centre for Molecular and Translational Medicine Research advisor at Grants and Innovation Office University of Gothenburg Grants and Innovation Office Erik Dahlbergsgatan 11 B Box 100, 405 30 Gothenburg, Sweden phone: +46-766186113 julia.gronros at gu.se -------------- next part -------------- An HTML attachment was scrubbed... URL: From lionel.guy at imbim.uu.se Wed Jun 16 09:54:01 2021 From: lionel.guy at imbim.uu.se (Lionel Guy) Date: Wed, 16 Jun 2021 07:54:01 +0000 Subject: [SocBiN] Associate Uppsala University: Senior Lecturer (DDLS Fellow) in data-driven research in epidemiology and infection biology Message-ID: Associate Senior Lecturer (DDLS Fellow) in data-driven research in epidemiology and infection biology The Department of Medical Biochemistry and Microbiology at Uppsala University is recruiting an associate senior lecturer (equivalent to assistant professor) with tenure track in data-driven research in infection biology and epidemiology. The position comes with a very generous package of SEK 17 million, which is intended to cover five years of the fellow’s salary, two doctoral students, two post-doc positions and ongoing costs. This position is part of a large initiative funded by the Wallenberg Foundation, to promote data-drive life sciences, in collaboration with SciLifeLab (see more here: https://www.scilifelab.se/data-driven/) See the full description and apply here: https://www.uu.se/en/about-uu/join-us/details/?positionId=399545 Lionel Guy, PhD Associate Professor Department for Medical Biochemistry and Microbiology, Uppsala University, Uppsala, Sweden lionel.guy at imbim.uu.se När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy From lars.snipen at nmbu.no Wed Jun 16 14:31:28 2021 From: lars.snipen at nmbu.no (Lars-Gustav Snipen) Date: Wed, 16 Jun 2021 12:31:28 +0000 Subject: [SocBiN] PhD-position at NMBU (Norway) Message-ID: A 3-year PhD-position in bioinformatics is available at the Norwegian University of Life Sciences (NMBU) in Ås, Norway. We have a new project involving the aquaculture industry, using on-site nanopore-sequencing for categorizing the sediments of the seafloor. This is part of efforts to make new standards for ensuring a sustainable aquaculture industry. See Aquaculture and environmental microbiology: PhD student in bioinformatics (207342) | Norwegian University of Life Sciences (NMBU) (jobbnorge.no) for more details and how to apply. Lars Snipen -------------- next part -------------- An HTML attachment was scrubbed... URL: From arne at bioinfo.se Thu Jun 17 14:12:30 2021 From: arne at bioinfo.se (Arne Elofsson) Date: Thu, 17 Jun 2021 14:12:30 +0200 Subject: [SocBiN] Job openings for "Assistant professor in data-driven cell and molecular biology" Message-ID: Dear colleagues Sorry for disturbing you. We have a number of extremely good positions in Sweden with deadlines in the fall. They are tenure track and funded by a new initiative by the Wallenberg foundation with approximately $2M in startup funding. Additional funding will be available to apply for. The main rule is that you have to be within 5 years from your PhD (with additional time allowed for parental leave, military service etc). In total there are 20 positions, with approximately 5 of these relevant to our community (the others are in Precision medicine, evolution and biodiversity, epidemiology and infection biology) The title of all position is "Assistant professor in data-driven cell and molecular biology", but a slight variation on the descriptions exist (but in principle, you could apply for all (although obviously the best in Stockholm University as I can get you as my colleague). A general link for all positions can be found here: https://www.scilifelab.se/data-driven/fellows/ Here are links to the five positions - Stockholm University (2 positions) - https://www.su.se/english/about-the-university/work-at-su/available-jobs?rmpage=job&rmjob=15126&rmlang=UK - KTH: "A specific focus is the development of methods that take a quantitative approach to cell and molecular biology with potential to give new insights of biophysical relevance." - https://www.kth.se/en/om/work-at-kth/lediga-jobb/what:job/jobID:406593/where:4/ - Chalmers: - https://www.chalmers.se/en/about-chalmers/Working-at-Chalmers/Vacancies/Pages/default.aspx?rmpage=job&rmjob=9592 - Linköping University - https://liu.se/jobba-pa-liu/lediga-jobb/ (link not available yet) I would appreciate that if you could spread the information to any suitable candidate, and if anyone wants to contact me please ask them to do so. Yours Arne ----------------------------------------- Arne Elofsson Science for Life Laboratory Tel:+46-(0)70 695 1045 Stockholm University http://bioinfo.se/ Box 1031, Email: arne at bioinfo.se 17121 Solna, Sweden Twitter: https://twitter.com/arneelof Scholar: http://scholar.google.se/citations?user=s3OCM3AAAAAJ ORCID: 0000-0002-7115-9751 -------------- next part -------------- An HTML attachment was scrubbed... URL: From bengt.persson at icm.uu.se Thu Jun 17 11:07:19 2021 From: bengt.persson at icm.uu.se (Bengt Persson) Date: Thu, 17 Jun 2021 11:07:19 +0200 Subject: [SocBiN] Assistant Professor (DDLS Fellow) in Data-driven Evolution and Biodiversity Message-ID: <235717cb-b877-e0c1-911e-9fe8385b3674@icm.uu.se> Assistant Professor (DDLS Fellow) in Data-driven Evolution and Biodiversity Uppsala University is recruiting an associate senior lecturer (equivalent to assistant professor) with tenure track in data-driven evolution and biodiversity. The position comes with a very generous package of SEK 17 million, which is intended to cover five years of the fellow’s salary, two doctoral students, two post-doc positions and ongoing costs. This position is part of a large initiative funded by the Knut and Alice Wallenberg Foundation, to promote data-drive life sciences, in collaboration with SciLifeLab (see more here: https://www.scilifelab.se/data-driven/) See the full description and apply here: https://www.uu.se/en/about-uu/join-us/details/?positionId=409922 All the best, Yours, Bengt -- Bengt Persson, M.D., Ph.D., Professor of Bioinformatics Head of department Department of Cell and Molecular Biology (ICM) Uppsala University Telephone: +46 18 471 4422 Mobile phone: +46 70 425 0230 Facsimile: +46 18 530 396 E-mail: bengt.persson at icm.uu.se Address: Uppsala University ICM -- Department of Cell and Molecular Biology BMC, room C10:308c Box 596 S-751 24 Uppsala, SWEDEN När du har kontakt med oss på Uppsala universitet med e-post så innebär det att vi behandlar dina personuppgifter. För att läsa mer om hur vi gör det kan du läsa här: http://www.uu.se/om-uu/dataskydd-personuppgifter/ E-mailing Uppsala University means that we will process your personal data. For more information on how this is performed, please read here: http://www.uu.se/en/about-uu/data-protection-policy -------------- next part -------------- An HTML attachment was scrubbed... URL: From Tatiana.Starikovskaya at ens.fr Mon Jun 21 09:58:02 2021 From: Tatiana.Starikovskaya at ens.fr (Tatiana Starikovskaya) Date: Mon, 21 Jun 2021 09:58:02 +0200 Subject: [SocBiN] CPM 2021 (+summer school) - 2nd call for participation Message-ID: ======================================= === CPM 2021 Call for PARTICIPATION === ======================================= 32nd Annual Symposium on Combinatorial Pattern Matching July 5-7, 2021, Wrocław, Poland https://cpm2021.ii.uni.wroc.pl/ The Annual Symposium on Combinatorial Pattern Matching (CPM) has by now over 30 years of tradition and is considered to be the leading conference for the community working on Stringology. The objective of the annual CPM meetings is to provide an international forum for research in combinatorial pattern matching and related applications such as computational biology, data compression and data mining, coding, information retrieval, natural language processing, and pattern recognition. The conference will be preceded by a student summer school on July 4, 2021. Due to the Covid-19 pandemic, the conference will be run in a hybrid mode: online over Zoom and offline in Wrocław, both with NO participation fees. Please register here: https://cpm2021.ii.uni.wroc.pl/registration.shtml Please register early, this will allow us to handle your registration in a smooth way (registration allows you to participate in the summer school as well). At the moment, citizens/residents of EU/EFTA countries and UK/Ireland can freely enter Poland, and citizens/residents of Japan, Canada, South Korea, Australia, Israel are allowed to enter by air. There is no quarantine with vaccine certificate or negative test (antigen or RT-PCR, before or after arrival). The exact rules are complicated and keep changing, so we strongly advise verifying them on your own. We will be happy to answer any questions concerning local arrangements at cpm2021 at cs.uni.wroc.pl . KEYNOTE SPEAKERS Hideo Bannai (Tokyo Medical and Dental University, Japan) Michal Koucký (Charles University, Czech Republic) Nadia Pisanti (University of Pisa, Italy & Erable Team INRIA, France) SUMMER SCHOOL SPEAKERS Martin Farach-Colton (Rutgers University, USA) Jakub Radoszewski (University of Warsaw, Poland) HIGHLIGHT SPEAKERS Panagiotis Charalampopoulos (Interdisciplinary Center Herzliya, Israel) Travis Gagie (Dalhousie University, Canada) ACCEPTED PAPERS https://cpm2021.ii.uni.wroc.pl/accepted.shtml -------------- next part -------------- An HTML attachment was scrubbed... URL: From lisa.klasson at icm.uu.se Wed Jun 23 11:44:11 2021 From: lisa.klasson at icm.uu.se (Lisa Klasson) Date: Wed, 23 Jun 2021 09:44:11 +0000 Subject: [SocBiN] Post-doc position (2 years) at Uppsala University Message-ID: Dear all, I’m recruiting a Postdoc (2 years) to work on evolutionary genomics of neotropical Drosophila and their endosymbiotic bacterium Wolbachia. The overall aim of our research is to study how symbiotic interactions between bacteria and animal hosts affect both partners’ genetic material and evolution. The candidate should have a PhD in bioinformatics, molecular biology or other relevant areas obtained no more than three years prior to the application deadline. The three-year period can be extended due to circumstances such as sick leave, parental leave, duties in labour unions, etc. Previous experience of working with NGS data and bioinformatic analyses, familiarity with Linux and a scripting language such as Python, Perl or R is necessary. Previous experience of de novo genome assemblies and comparative genomics is highly desirable. The applicant must have a good ability to work independently as well as in a group. Excellent written and oral knowledge of English is required, as the work takes place in an international environment. Deadline for applications is on the 30th of June, apply via https://uu.varbi.com/what:job/jobID:408314/ Best, Lisa ================================== Lisa Klasson, Ph.D., Molecular Evolution Department of Cell and Molecular Biology Uppsala University Box 596 SE-751 24 Uppsala Sweden phone: +46 (0)18 471 6403 website: http://www.icm.uu.se/molekylar-evolution/klasson-labb/ -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: smime.p7s Type: application/pkcs7-signature Size: 4093 bytes Desc: not available URL: From prash at bioclues.org Fri Jun 25 02:43:52 2021 From: prash at bioclues.org (Prash) Date: Fri, 25 Jun 2021 06:13:52 +0530 Subject: [SocBiN] CfP //Starting new batch of Bioinformatics for school children (BIXS) Message-ID: Dear all, We are starting our third cohort from July for school children as the second cohort graduated this month. Please encourage your children aged 12-18 years to take up this! The first and best program in the world that has been successfully implemented since 2008! Let's make the next generation more competent as we prepare them for a strong #STEMM curriculum. #bioinformatics #schools More at http://bioclues.org/bifx-for-schools/ Regards Prash for Team Bioclues. -- Prashanth N Suravajhala, Ph.D. Senior Scientist, Systems Biology Department of Biotechnology and Bioinformatics Birla Institute of Scientific Research Statue Circle, Jaipur 302001 RJ, India Telephone: (work) +91-141-2385094. Extension 308 E mail: prash[AT]bisr[DOT]res[DOT]in Home page: http://www.bioinformatics.org/wiki/Prash Twitter: @prashbio "Each problem that I solved became a rule, which served afterwards to solve other problems." ~ Rene Descartes -- Prashanth N Suravajhala, Ph.D. Senior Scientist, Systems Biology Department of Biotechnology and Bioinformatics Birla Institute of Scientific Research Statue Circle, Jaipur 302001 RJ, India Telephone: (work) +91-141-2385094. Extension 308 E mail: prash[AT]bisr[DOT]res[DOT]in Home page: http://www.bioinformatics.org/wiki/Prash Twitter: @prashbio "Each problem that I solved became a rule, which served afterwards to solve other problems." ~ Rene Descartes -------------- next part -------------- An HTML attachment was scrubbed... URL: