From jonas.paulsen at ibv.uio.no Fri Oct 1 14:21:38 2021 From: jonas.paulsen at ibv.uio.no (Jonas Paulsen) Date: Fri, 1 Oct 2021 12:21:38 +0000 Subject: [SocBiN] PhD position in Bioinformatics - University of Oslo Message-ID: <498a4442c5a5411ca0b87148762e23ed@ibv.uio.no> A fully funded bioinformatics PhD position is available at the Department of Biosciences, University of Oslo, Norway. The project aims at unraveling new links between 3D genome reorganization and cancer development and progression. Specifically, the successful candidate will develop new computational tools to study 3D genome organization at unforeseen resolution and accuracy. Further, the candidate will analyze already generated in-house datasets from Hi-C, RNA-seq and related high-throughput genomics experiments to shed new light on how the 3D genome is altered and reorganized in cancer cells. Relevant skills: Bioinformatics, high-throughput sequencing analyses, programming (e.g. Python, C++) Salary offered: NOK 491 200 – 534 400 per year Application deadline: 24th October 2021 Read more and apply here: https://www.jobbnorge.no/en/available-jobs/job/212982/phd-research-fellow-in-bioinformatics Jonas Paulsen, PhD Associate Professor Section for Genetics and Evolutionary Biology (EVOGENE) Centre for Bioinformatics Department of Biosciences University of Oslo https://www.paulsenlab.com/ Tel: +47 41147241 -------------- next part -------------- An HTML attachment was scrubbed... URL: From sermarcue at gmail.com Mon Oct 4 09:00:00 2021 From: sermarcue at gmail.com (Sergio Martinez Cuesta) Date: Mon, 4 Oct 2021 08:00:00 +0100 Subject: [SocBiN] Research Bioinformatics Scientist - AstraZeneca (Cambridge, UK) Message-ID: Are you a bioinformatician passionate about medical research and looking for an exciting and impactful new challenge? Do you have experience in analysing genome wide omics data and high-throughput molecular or genetic screens for target identification and drug discovery? Then why not join our Data Sciences & Quantitative Biology team in Cambridge, UK and apply bioinformatics and computational solutions to help us evolve and extend our capabilities in our drive to find the medicines of the future. Check out our latest position! Apply as soon as possible https://careers.astrazeneca.com/job/cambridge/research-bioinformatics-scientist-molecular-screening-and-omics-research-data-sciences-and-quantita/7684/14994101952 -------------- next part -------------- An HTML attachment was scrubbed... URL: From Joana.Goncalves at tudelft.nl Tue Oct 5 17:44:21 2021 From: Joana.Goncalves at tudelft.nl (=?utf-8?B?Sm9hbmEgR29uw6dhbHZlcyAtRVdJ?=) Date: Tue, 5 Oct 2021 15:44:21 +0000 Subject: [SocBiN] PhD/postdoc in multimodal ML for molecular maps of human tissue Message-ID: A fully funded PhD/postdoc position is available at the TU Delft in multimodal machine learning for molecular maps of human tissue. The position is in the context of HuBMAP, the Human BioMolecular Atlas Program funded by the National Institutes of Health (NIH, USA), and involves active collaboration with our partners in the US (Vanderbilt University and others). You will do research on multimodal machine learning methods to discover and leverage patterns across heterogeneous high-dimensional molecular profiles. Some topics of interest: - Integration of measurements for different types of molecular species (using techniques such as transcriptomics, proteomics, and lipidomics). - Multiscale analysis along various dimensions at different resolutions, spatial and/or temporal. - Recognition of coherent and contrasting/differential patterns. - Machine learning of cell types and other functional tissue structures based on molecular content. - Interpretability of multimodal pattern recognition and prediction models. Salary: PhD candidate (from € 2434 per month in the first year to € 3111 in the fourth year), Postdoc (scale 10: € 2836 - € 4474) Application deadline: 3rd November 2021 (ongoing selection until the position is filled) Read more and apply at: https://www.tudelft.nl/over-tu-delft/werken-bij-tu-delft/vacatures/details?jobId=3994 -- Joana Gonçalves Assistant Professor TU Delft | Pattern Recognition & Bioinformatics Meet (MS Teams): https://edu.nl/k4jxr Meet (Zoom): https://tudelft.zoom.us/my/joanagoncalves Web: http://joanagoncalves.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From alexander.schliep at cse.gu.se Wed Oct 13 17:22:00 2021 From: alexander.schliep at cse.gu.se (Alexander Schliep) Date: Wed, 13 Oct 2021 17:22:00 +0200 Subject: [SocBiN] =?utf-8?q?Pangenomes_=E2=80=94_Evolution_and_Computation?= =?utf-8?q?=2C_Nov_17=2C_2021=2C_at_the_Wallenberg_Conf=2E_Center=2C_G?= =?utf-8?q?=C3=B6teborg?= Message-ID: Dear colleagues, we cordially invite you to participate in a workshop on "Pangenomes — Evolution and Computation". Pangenomes are revolutionizing biology, and new computational and technical tools are providing new insights into evolution and biodiversity. A pangenome is a catalog of all the genetic variation found within a population providing a more comprehensive and inclusive platform to make new discoveries without the biases inherent in using any one genome as a reference. We will bring together world experts in pangenomics for a one-day meeting on Wednesday, November 17, 2021, in Gothenburg, Sweden and remotely More information about the one-day workshop at the Wallenberg Conference Centre, including a registration form, can be found at https://pgec2021.schlieplab.org/. This event is organized by Scott V. Edwards (Harvard and Dept. of Biological and Environmental Sciences, University of Gothenburg) and Alexander Schliep (Data Science & AI, CSE, University of Gothenburg). We are grateful for support from the BioEnv Dept. at GU, NBIS and the Museum for Comparative Zoology (Harvard). For the organizers, Alexander Schliep -- Dr. Alexander Schliep, Associate Professor Data Science & AI Division, http://dsai.se, Computer Science & Engineering, Göteborgs Universitet | Chalmers Lab: https://schlieplab.org Tel: +46 76-608 69 63 From olivier.colliot at sorbonne-universite.fr Wed Oct 20 14:49:12 2021 From: olivier.colliot at sorbonne-universite.fr (Olivier Colliot) Date: Wed, 20 Oct 2021 14:49:12 +0200 (CEST) Subject: [SocBiN] Call for new team leaders in computational sciences for biology/medicine (Paris, France) Message-ID: <862967122.10387104.1634734152592.JavaMail.zimbra@sorbonne-universite.fr> The Paris Brain Institute (ICM - [ https://institutducerveau-icm.org/en/ | https://institutducerveau-icm.org/en/ ] ) is launching a call to recruit up to 3 team leaders at the starting, junior or mid-career levels and notably working in any area of computational methods for neuroscience and neurological disorders or theoretical neuroscience (including but not limited to computational systems biology, bioinformatics, modeling of neural circuits, data science, machine learning, signal processing...). Note that we welcome applications of researchers who have not previously worked on applications to neuroscience but who have a strong background in any of the areas of computational sciences mentioned above and who will commit to work on neuroscience applications when they join the institute. Partnership with Inria ( [ http://www.inria.fr/ | www.inria.fr ] ), the National Institute for Research in Digital Science and Technology, will provide opportunities to create a joint research team. We welcome applications from talented individuals with the ambition to establish an internationally competitive research group. The new team leaders will benefit from a competitive start-up package, recurrent core funding and access to state of the art core facilities. Please find the link related to the call : [ https://jobs.sciencecareers.org/job/554584/group-leader-position/ | https://jobs.sciencecareers.org/job/554584/group-leader-position/ ] . Expression of interest must include a short CV, a complete list of publications highlighting up to five significant papers, and a brief description of achievements and future research (2 pages). Expression of interest must be sent by November 15th, 2021 to: scientific.affairs at icm-institute.org Short-listed applicants will be invited to submit a full application proposal by February 15th, 2022. If you have any questions regarding the call, please contact scientific.affairs at icm-institute.org -------------- next part -------------- An HTML attachment was scrubbed... URL: From johanna.sagemark at gmail.com Wed Oct 20 14:30:02 2021 From: johanna.sagemark at gmail.com (Johanna Sagemark) Date: Wed, 20 Oct 2021 14:30:02 +0200 Subject: [SocBiN] Postdoc opportunity at AstraZeneca Message-ID: Hi, Do you have expertise in, and passion for, data science and computational biology? Would you like to apply your expertise to pioneer personalized drug safety in a company that follows the science and turns ideas into life changing medicines? We have a postdoc opportunity for a skilled bioinformatician to join AstraZeneca in Gothenburg for a project in *Personalized Medicine and Drug Safety Using Multiomics and Data Science Approaches.* The project spans 2-3 years. Read more at: https://careers.astrazeneca.com/job/gothenburg/postdoc-fellow-personalized-medicine-and-drug-safety-using-multiomics-and-data-science-approaches/7684/16564811952 Best, Johanna -------------- next part -------------- An HTML attachment was scrubbed... URL: From felipe.cava at umu.se Thu Oct 21 13:02:38 2021 From: felipe.cava at umu.se (Felipe Cava) Date: Thu, 21 Oct 2021 13:02:38 +0200 Subject: [SocBiN] postdoc opportunity in data-driven life science Message-ID: Dear All, I would appreciate it if you can circulate this postdoc opportunity at your research institutes. All the best, Felipe -- Felipe Cava Associate Professor (Lektor) in Infection Biology Department of Molecular Biology, Umeå University (Affiliated) MIMS - Laboratory for Molecular Infection Medicine Sweden Laboratory 6k-42. Office 6K-26B SE-901 87 Umeå. Sweden https://thecavalab.com/ telephone: +46-090-7856755 Fax: +46(0)90-77 26 30 -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: Postdoc Data driven life science Cava Lab 2021.pdf Type: application/pdf Size: 74070 bytes Desc: not available URL: From ithof at kth.se Thu Oct 21 15:24:19 2021 From: ithof at kth.se (Ian Torao Hoffecker) Date: Thu, 21 Oct 2021 13:24:19 +0000 Subject: [SocBiN] Molecular programming PhD position at KTH Stockholm In-Reply-To: <24c6380b4f654691a6a693ba6a837cf2@kth.se> References: <24c6380b4f654691a6a693ba6a837cf2@kth.se> Message-ID: <5e08b37cc6e749d8a782f668a8b6d466@kth.se> Hi all, There is an open PhD position in the Molecular Programming group at Scilifelab/KTH Royal Inst. Technology, Gene Technology Department in Stockholm Sweden, and the ad is still open until Oct 28th. The project is focused on the development of molecular methods for imaging based on sequencing. If you have a Master's equivalent and are interested in both experimental and computational science, I encourage you to apply! Submit applications here: https://kth.varbi.com/en/what:job/jobID:424617/ Feel free to contact me for questions ithof at kth.se and please spread the word. Best, Ian ------------------------------------------- Ian Hoffecker, PhD | Group leader Department of Gene Technology School of Engineering Sciences in Chemistry, Biotechnology and Health KTH Royal Institute of Technology Phone: +46-725-024-619 Web: https://hoffeckerlab.com Address:Science for Life Laboratory | Tomtebodavägen 23a | 17165 Solna, Sweden ------------------------------------------- -------------- next part -------------- An HTML attachment was scrubbed... URL: From skanduri at ifi.uio.no Fri Oct 22 11:43:15 2021 From: skanduri at ifi.uio.no (Chakravarthi Kanduri) Date: Fri, 22 Oct 2021 09:43:15 +0000 Subject: [SocBiN] A permanent Senior engineer position available at the Centre for bioinformatics for a Python/Java systems developer Message-ID: Hi all, A permanent Senior engineer position is available at the Centre for bioinformatics for a Python/Java systems developer. Please circulate the information to relevant candidates. See the thread below for more information: https://twitter.com/unioslo_bioinfo/status/1451480982255702026 https://www.jobbnorge.no/en/available-jobs/job/213462/senior-engineer-position-available-for-python-java-systems-developer Best Regards, Chakravarthi Kanduri ------------------------ Chakravarthi Kanduri, Ph.D. Researcher & Administrative Coordinator, Centre for Bioinformatics, University of Oslo Email: skanduri at uio.no, Mobile: +47 46379713 -------------- next part -------------- An HTML attachment was scrubbed... URL: