[Inparanoid] BLASTALL and inparanoid

[de Man, Tom]

Dear people from inparanoid,

The first step of inparanoid is performing a BLASTALL run, however the new BLAST+ does not contain BLASTALL anymore.
With this reimplementation of BLAST you deal with separate programs.

At the original BLAST you use commands like: BLASTALL -p blastp. However with BLAST+ you can run blastp as a program instead of using it as a parameter of BLASTALL. Is there a version of inparanoid that can handle this new BLAST or should I just use an older version of BLAST with BLASTALL included.

Many thanks for your reply.

Kind regards,
Tom de Man

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