[Inparanoid] BLASTALL and inparanoid
de Man, Tom
tom.deman at emory.edu
Thu May 24 16:15:46 CEST 2012
Dear people from inparanoid,
The first step of inparanoid is performing a BLASTALL run, however the new BLAST+ does not contain BLASTALL anymore.
With this reimplementation of BLAST you deal with separate programs.
At the original BLAST you use commands like: BLASTALL -p blastp. However with BLAST+ you can run blastp as a program instead of using it as a parameter of BLASTALL. Is there a version of inparanoid that can handle this new BLAST or should I just use an older version of BLAST with BLASTALL included.
Many thanks for your reply.
Tom de Man
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