[Inparanoid] offline blast parameters when setting run_blast = 0

Sammy Desilva sammy.ich17 at gmail.com
Mon Nov 10 12:27:34 CET 2014


As mentioned in inparanoid.pl $run_blast could be set 0 if we have the
blast files. For the pairwise comparison of a big dataset I want to run the
blastall on cluster. Could you tell me which parameter-set of blastall I
should use so that there will be no difference in results (when $run_blast
is 1)? Next, when setting $run_blast = 0 the blastall results should
already be parsed?

Thanks.
Sammy
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