[Inparanoid] Problem with Inparanoid groups

[Erik Sonnhammer]

Hi, probably something went wrong with Blast.

In the beginning of the output file Output.xxx you can see how many 
homologs were detected by Blast, that will probably tell you what went 
wrong.

Erik Sonnhammer

On 09/18/2014 03:19 AM, Sammy Desilva wrote:
> Hello,
>
> I downloaded the latest version of Inparanoid8 on my Ubuntu 12.1
> and ran Inparanoid on 2 big proteome. On the default paramete the 
> algorithm resulted only 70 groups while when I used orthomcl on same 
> dataset it resulted around 3000 groups.
> Please let me know what i am doing wrong?
>
> Thanks
> Sam
>
>
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