From anusblat at gmail.com Sun Jan 18 22:11:05 2015 From: anusblat at gmail.com (Alejandro Nusblat) Date: Sun, 18 Jan 2015 18:11:05 -0300 Subject: [Inparanoid] How to filter and other questions Message-ID: Dear members of InParanoids (great Page), I have some question and may be you can help me. 1) Some Gene ID or protein ID (uniprot) from Tetrahymene thermophila could not be find by Gene search. Example: TTHERM_01008630 / Q24FB1 (uniprot) 2) I have an Gene ID and I want to know if there are orthologs in other specific organisms (not in all other organisms) Example: Gene ID: TTHERM_00765110 (from Tetrahymena thermophila) I want to know orthologs only in Paramecium tetraurelia. 3) May I do question 2, but with a lot of genes at once in the querry? Thanks in advance, Kind regards, Aleandro. Example: Gene ID: TTHERM_01008630 -- Alejandro Nusblat, PhD. Catedra de Microbiologia Industrial y Biotecnologia FFYB - UBA Junin 956 6to piso. anusblat at gmail.com anusblat at ffyb.uba.ar -------------- next part -------------- An HTML attachment was scrubbed... URL: From erik.sonnhammer at scilifelab.se Mon Jan 19 14:49:17 2015 From: erik.sonnhammer at scilifelab.se (Erik Sonnhammer) Date: Mon, 19 Jan 2015 14:49:17 +0100 Subject: [Inparanoid] How to filter and other questions In-Reply-To: References: Message-ID: <54BD0B5D.7080702@scilifelab.se> Hi, On 01/18/2015 10:11 PM, Alejandro Nusblat wrote: > Dear members of InParanoids (great Page), > > I have some question and may be you can help me. > > 1) Some Gene ID or protein ID (uniprot) from Tetrahymene thermophila > could not be find by Gene search. > Example: > TTHERM_01008630 / Q24FB1 (uniprot) Then simply no ortholog was found for it. > > 2) I have an Gene ID and I want to know if there are orthologs in > other specific organisms (not in all other organisms) > Example: > Gene ID: TTHERM_00765110 (from Tetrahymena thermophila) > I want to know orthologs only in Paramecium tetraurelia. > > 3) May I do question 2, but with a lot of genes at once in the querry? I'm afraid we don't support that. Erik Sonnhammer > > Thanks in advance, > > Kind regards, > > Aleandro. > > > > > > > Example: > Gene ID: TTHERM_01008630 > > > > > -- > Alejandro Nusblat, PhD. > Catedra de Microbiologia Industrial y Biotecnologia > FFYB - UBA > Junin 956 6to piso. > anusblat at gmail.com > anusblat at ffyb.uba.ar > > > _______________________________________________ > InParanoid mailing list > InParanoid at lists.su.se > https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se -------------- next part -------------- An HTML attachment was scrubbed... URL: