From erik.sonnhammer at scilifelab.se  Mon Jun  1 15:51:12 2015
From: erik.sonnhammer at scilifelab.se (Erik Sonnhammer)
Date: Mon, 01 Jun 2015 15:51:12 +0200
Subject: [Inparanoid] Question
In-Reply-To: <556AFF7F.4050109@etu.univ-nantes.fr>
References: <556AFF7F.4050109@etu.univ-nantes.fr>
Message-ID: <556C6350.3060004@scilifelab.se>

Hi,

one can pick another cutoff, but based on experience we found 40 bits to 
be safe yet permissive.  It used to be 50 but with the new low 
complexity filtering in Blast we could lower it to 40 without getting 
too many low complexity false positives.

/Erik

On 2015-05-31 14:33, EL MHIJAR Sanae wrote:
> Dear InParanoid-Mailinglist,
> I am working on a project and i use your database/program that it 
> really  help me. So i have one question about the score in this 
> program , by default it's 40 bits, i dont understant why you choose 40 
> bits, and for cherche orthologues how we can choose this score please ?
>
> thank you in advance for every answer.
>
> Sanae
>
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