[Inparanoid] Question
Erik Sonnhammer
erik.sonnhammer at scilifelab.se
Mon Jun 1 15:51:12 CEST 2015
Hi,
one can pick another cutoff, but based on experience we found 40 bits to
be safe yet permissive. It used to be 50 but with the new low
complexity filtering in Blast we could lower it to 40 without getting
too many low complexity false positives.
/Erik
On 2015-05-31 14:33, EL MHIJAR Sanae wrote:
> Dear InParanoid-Mailinglist,
> I am working on a project and i use your database/program that it
> really help me. So i have one question about the score in this
> program , by default it's 40 bits, i dont understant why you choose 40
> bits, and for cherche orthologues how we can choose this score please ?
>
> thank you in advance for every answer.
>
> Sanae
>
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