[Inparanoid] INPARANOID BLAST search

Erik Sonnhammer erik.sonnhammer at scilifelab.se
Mon Oct 31 11:53:40 CET 2016

Hi, that is just a regular Blast search to find the protein you are 
looking for.


On 10/29/2016 11:54 AM, fritz.franz at gmx.net wrote:
> Hi,
> I have a question concerning the InParanoid8 Blast search option on 
> the web page.
> Is this just a regular BLAST search or is this already somehow using 
> the Inparanoid algorithm or a bi-directional Blast search?
> I realized that I get different results with the same protein by using 
> the "Gene search" option and entering the protein ID or by using the 
> "Blast" option and pasting the protein sequence. According to the FAQ 
> both options should deliver orthologs. Is this really the case for the 
> "Blast" option?
> Thank you very much for your help!
> Fritz
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