From 915403228 at qq.com Thu Dec 21 12:40:19 2017 From: 915403228 at qq.com (=?gb18030?B?wejI9Nz4?=) Date: Thu, 21 Dec 2017 19:40:19 +0800 Subject: [Inparanoid] =?gb18030?b?16q3oqO6c2VlayBoZWxwIGZvciB0aGUgdXNhZ2Ug?= =?gb18030?q?of_the_InParanoid_software?= Message-ID: ------------------ 原始邮件 ------------------ 发件人: "凌若茗";; 发送时间: 2017年12月21日(星期四) 晚上7:36 收件人: "inparanoid-at-sbc.su.se"; 主题: seek help for the usage of the InParanoid software Dear staffs of InParanoid: Recently, I downloaded the local version Inparanoid 4.1 to analyse the ortholog groups among some species. However,the result obtained differed with it from the InParanoid website(as two attachments to this letter). the website provides the InParanoid scores(0-1) and the bootstrap(%) of each cluster, but there is no "InParanoid scores(0-1)", which is vital for me, in my results. In this case, I feel disappointed for it. Could you help me with this problems? It will be very meaningful if you can help! Hoping for your quick response! Thanks in advance! Sincerely a student from HZAU in China -------------- next part -------------- An HTML attachment was scrubbed... URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: the result from the website.png Type: application/octet-stream Size: 65297 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: the result from the software.png Type: application/octet-stream Size: 15130 bytes Desc: not available URL: From erik.sonnhammer at scilifelab.se Thu Dec 21 15:55:24 2017 From: erik.sonnhammer at scilifelab.se (Erik Sonnhammer) Date: Thu, 21 Dec 2017 15:55:24 +0100 Subject: [Inparanoid] =?utf-8?b?6L2s5Y+R77yac2VlayBoZWxwIGZvciB0aGUgdXNh?= =?utf-8?q?ge_of_the_InParanoid_software?= In-Reply-To: References: Message-ID: <262fb45c-33c4-9a6c-0f97-cf68513d16dd@scilifelab.se> Hi 凌若茗, The score you are talking about is the 'inparalog score' and it is also shown in the inparanoid.pl output, but as a percentage. It is easier to parse this out in the SQL output. Different results compared to the website could come from e.g. using different proteomes, different parameters, or different blast versions. Erik Sonnhammer On 2017-12-21 12:40, 凌若茗 wrote: > > > > ------------------ 原始邮件 ------------------ > *发件人:* "凌若茗";; > *发送时间:* 2017年12月21日(星期四) 晚上7:36 > *收件人:* "inparanoid-at-sbc.su.se"; > *主题:* seek help for the usage of the InParanoid software > > Dear staffs of InParanoid: > > Recently, I downloaded the local version Inparanoid 4.1 to analyse the > ortholog groups among some species. However,the result obtained > differed with it from the InParanoid website(as two attachments to > this letter). > the website provides the InParanoid scores(0-1) and the bootstrap(%) > of each cluster, but there is no "InParanoid scores(0-1)", which is > vital for me, in my results. In this case, I feel disappointed for it. > > Could you help me with this problems? It will be very meaningful if > you can help! > Hoping for your quick response! Thanks in advance! > Sincerely > a student from HZAU in China > > > > _______________________________________________ > InParanoid-at-sbc.su.se mailing list > InParanoid-at-sbc.su.se at lists.su.se > https://lists.su.se/mailman/listinfo/inparanoid-at-sbc.su.se -------------- next part -------------- An HTML attachment was scrubbed... URL: