[Primeusers] PrimeGSR installation

jacky at ebi.ac.uk jacky at ebi.ac.uk
Wed Feb 4 15:24:53 CET 2009


Hello,

I am having trouble compiling PrimeGSR for use on our computing cluster.

Initially there were some problems with incompatible Bison and M4 versions
but I have come past that step in compilation now using Bison 2.4.1 and M4
1.4.9.

However, compilation now stops at the following stage:

bison -d -y -p yytree_ NHXparse.y
NHXparse.y:141.30-31: $$ for the midrule at $3 of `subtree' has no
declared type
NHXparse.y:177.96-97: $$ for the midrule at $3 of `ext_annotation' has no
declared type
NHXparse.y:178.97-98: $$ for the midrule at $3 of `ext_annotation' has no
declared type
NHXparse.y:141.11-89: warning: type clash on default action: <v> != <>
NHXparse.y:177.18-128: warning: type clash on default action: <a> != <>
NHXparse.y:178.18-130: warning: type clash on default action: <a> != <>
make: *** [NHXparse.c] Error 1

It looks like it could still be a Bison issue. Which version of Bison are
you running your installation with?

Thanks very much,

Jacky




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