[Primeusers] bison -d -y -p yytree_ NHXparse.y ERROR

[Lars Arvestad]

Hi, 
I have made an update to the code and will send it to you in a off-list message. Unfortunately, I don't seem to be able to upload this to our web site right now, but hope to fix that tomorrow or so.

	Best regards,
	Lars


--
NOTE! New address: SciLifeLab, Box 1031, 171 21 Solna, Sweden

Computational Biology at Nada, Stockholm University,
and Science for Life Laboratories
http://www.csc.kth.se/~arve



May 26, 2011 kl. 3:15 PM skrev Tõnu Margus:

> Hi, 
> 
> I am trying to compile PrimeGSR_1.0  on mac  OS X 10.6.7
> the bison version is  2.5   and gives me the following error
> 
> %  bison -d -y -p yytree_ NHXparse.y
> NHXparse.y:141.30-31: $$ for the midrule at $3 of `subtree' has no declared type
> NHXparse.y:177.96-97: $$ for the midrule at $3 of `ext_annotation' has no declared type
> NHXparse.y:178.97-98: $$ for the midrule at $3 of `ext_annotation' has no declared type
> NHXparse.y:141.11-89: warning: type clash on default action: <v> != <>
> NHXparse.y:177.18-128: warning: type clash on default action: <a> != <>
> NHXparse.y:178.18-130: warning: type clash on default action: <a> != <>
> 
> 
> I saw similar error was reported in this mailing list before and modified NHXparse.y (by deleting lines 177, 178, 141)
> 
> However, compiling ends with Exit status 1
> 
> any suggestions
> 
> 
> Tõnu 
> 
> 
> ---------------------------------------------------------------------------------------------------------
> Tõnu Margus
> Estonian Biocentre & IMCB
> Riia 23, 51010
> Tartu, Estonia
> 
> 
> E-mail: tmargus at ebc.ee
> Phone: +372 7376037 
> --------------------------------------------------------------------------------------------------------
> 
> 
> 
> 
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