[Primeusers] Questions about duplication and loss rates

changdan at umich.edu changdan at umich.edu
Fri Oct 7 17:41:44 CEST 2011


Hi Lars,

Thank you for your reply. I have another question about citing the  
"mcmc_analysis.pl". Do you have any suggestions on how I should cite  
this perl script in my manuscript? Or is it regarded as a script  
implemented in the PRIME_GSR program? Thank you.

Dan


Quoting Lars Arvestad <arve at csc.kth.se>:

> Hi,
> The unit is decided by how you date the species tree. So if you  
> dated the nodes with MYA, you events per gene and MYA.
>
> Lars
>
> Sent from a keyboard-crippled device.
>
> 5 okt 2011 kl. 22:58 skrev changdan at umich.edu:
>
>> Hi all,
>>
>> I have a question about the units of gene birth rate and gene death
>> rate in the final output file. Are they duplications/losses per gene
>> per million years? And how are these rates calculated? Sorry I could
>> not find the info in the manual or the original paper. Thank you.
>>
>> Best,
>>
>> Dan
>>
>>
>>
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