From arne.elofsson at gmail.com  Wed Jun  5 10:06:56 2024
From: arne.elofsson at gmail.com (Arne Elofsson)
Date: Wed, 5 Jun 2024 10:06:56 +0200
Subject: [SocBiN] Fwd: AlgoSB 2024: STRUCTURAL BIOINFORMATICS IN THE
 ALPHAFOLD / DEEP LEARNING ERA
In-Reply-To: <20240605073705.5001E3305D1F@ptb-04020413.inria.fr>
References: <20240605073705.5001E3305D1F@ptb-04020413.inria.fr>
Message-ID: <CAND8g_bCacKL05c7y_vdR4b1FGHPmh8bGo1wPTF7m2PTvvLBeA@mail.gmail.com>

---------- Forwarded message ---------
From: <frederic.cazals at inria.fr>
Date: Wed, 5 Jun 2024, 09:38
Subject: AlgoSB 2024: STRUCTURAL BIOINFORMATICS IN THE ALPHAFOLD / DEEP
LEARNING ERA
To: <arne at bioinfo.se>


Dear Colleague,

Please find below the announcement for the 10th edition of the Winter
School on Algorithms in Structural Bioinformatics (AlgoSB).  This year's
topic is

       STRUCTURAL BIOINFORMATICS IN THE ALPHAFOLD / DEEP LEARNING ERA

The school is sponsored by the CNRS, Inria, IESC, GDR BiMMM, I2BC, and the
IA-cluster ANITI.

We would appreciate your forwarding it to PhD students, postdocs, or other
colleagues who might be interested.

Best regards,

J. Andreani, on behalf of the organization and scientific committees
https://algosb2024.sciencesconf.org/

---
___________________________________________________________________________

WINTER SCHOOL, ALGORITHMS IN STRUCTURAL BIOINFORMATICS:

     STRUCTURAL BIOINFORMATICS IN THE ALPHAFOLD / DEEP LEARNING ERA
     https://algosb2024.sciencesconf.org/

November 17-22, 2024
Institute of Scientific Study of Cargèse, https://iesc.universita.corsica/

___________________________________________________________________________

We are pleased to announce the 10th edition of the Algorithms in Structural
Bioinformatics (AlgoSB) winter school. The aim of AlgoSB is to introduce
advanced methods in Structural Bioinformatics in the largest sense, giving
special attention to interdisciplinary approaches.  This year's focus will
be on structural bioinformatics in the AlphaFold / deep learning era.

PROGRAM

Each day's course consists of a lecture in the morning followed by a
practical session on the participants' computers in the afternoon.
The topics of the classes are the following (details at
https://algosb2024.sciencesconf.org/page/customizable_program)

I Deep learning for scientific applications
  Julien Mairal (Inria Grenoble, France)

II  AlphaFold: A Case Study in Deep Learning for Protein Structure
Prediction
    Paulyna Magaña and Maxim Tsenkov (EMBL-EBI, UK)

III Design of functional biomolecules using deep generative models
    Alisa Khramushin and Ilia Igashov (Correia lab, EPFL, Switzerland)

IV Artificial Intelligence deciphers the code of life written in proteins
    Burkhard Rost and Tobias Senoner (TUM, Germany)

V Deep Generative Models for Sampling at Equilibrium
  Marylou Gabrié (CMAP, École Polytechnique, France)


VENUE

The school will take place at Institut d'Études Scientifiques de Cargèse -
Université de Corse (https://iesc.universita.corsica/),
Corsica.


AUDIENCE

The AlgoSB school is targeted towards PhD students, postdocs, and junior
researchers from public research institutions and industry, both in France
and internationally. This school is limited to 35 participants.  It is
expected that all accepted participants will participate in the entire
school. Each participant will be expected to provide a short presentation
of their research interests at the start of the school.

APPLICATION

A one-page application (pdf format) should be sent by e-mail to
algosb-coordinators at inria.fr with the subject "AlgoSB application".
The application should provide a mini-vitae or a pointer to the full vitae,
a brief presentation of the applicant's research interests, and a
description of how the offered courses can benefit their work.

Institute for Scientific Study of Cargese (IESC)

Application deadline: July 14, 2024
Confirmation of participation: expected July 25, 2024 Registration website
opening: expected in September 2024

Registrations fees (*):
- 1500 euros regular rate (non-academic),
- 900 euros for researchers and professors from Public Research
Institutions and Universities,
- 560 euros for PhD students.

The registration fee includes housing at the IESC in a shared double room,
gala dinner, lunches and coffee breaks. A limited number of single rooms
may be available for a supplemental fee.

(*) Registration fees may be reduced if more sponsors are identified. The
most up-to-date information can be found at
https://algosb2024.sciencesconf.org/page/customizable_registration

ORGANIZERS

Organization Committee
              Jessica Andreani, I2BC, CEA/CNRS/Université Paris-Saclay
              Frédéric Cazals, Inria Sophia-Antipolis-Méditerranée
              Juan Cortés, LAAS-CNRS
              Sergei Grudinin, LJK, UMR 5224, CNRS IMAG Université Grenoble
Alpes

Scientific Committee
               Frédéric Cazals, Inria Sophia-Antipolis-Méditerranée
               Isaure Chauvot de Beauchêne, LORIA-CNRS
               Juan Cortés, LAAS-CNRS
               Yann Ponty, Ecole Polytechnique
               Charles H. Robert, LBT-CNRS
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From patrick.bryant at live.com  Fri Jun 14 11:55:30 2024
From: patrick.bryant at live.com (patrick bryant)
Date: Fri, 14 Jun 2024 09:55:30 +0000
Subject: [SocBiN] I am hiring a PhD student in AI for structure prediction
 and design
Message-ID: <VE1PR08MB5214FEF51D41FA4BEACFB11EE9C22@VE1PR08MB5214.eurprd08.prod.outlook.com>

Hi,

I am hiring a PhD student in AI for structure prediction and design.

The position is fully funded for 5 years (salary, health insurance, benefits) and will take place at Stockholm University/SciLifeLab. If you know how to code and want to develop new molecules for biotech applications - apply!
https://www.su.se/english/about-the-university/work-at-su/available-jobs/phd-student-positions-1.507588?rmpage=job&rmjob=23908&rmlang=UK

The development will build on our previous work:
https://www.nature.com/articles/s41467-024-48837-6
https://www.nature.com/articles/s41467-022-28865-w
https://www.nature.com/articles/s41467-022-33729-4

About us: https://www.scilifelab.se/researchers/patrick-bryant/


Best,

Patrick Bryant
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From doncheva at rth.dk  Thu Jun 13 18:04:43 2024
From: doncheva at rth.dk (Nadezhda Tsankova Doncheva)
Date: Thu, 13 Jun 2024 18:04:43 +0200
Subject: [SocBiN] 8th Danish Bioinformatics Conference in Copenhagen,
 21-22 August 2024!
Message-ID: <A1406D3F-542B-4F59-8F3A-B87B9A283F18@rth.dk>

Dear colleagues, 

 

We are excited to invite you to the 8th Danish Bioinformatics Conference, which will take place on August 21-22, 2024 in Panum at the University of Copenhagen! This year we have an exciting program highlighting many aspects of informatics and digital health represented by multiple sessions and workshops, including Computational genomics, Integrative omics, Deep learning, and Systems medicine. See our conference website for more details: https://eventsignup.ku.dk/8danishbioinfconference/.

 

The registration and abstract submission forms just opened this morning and we will close for early registration on July 1. Note that spots are limited and early birds get access to our social dinner/networking event after the first day of the conference!

 

Looking forward to seeing many of you here in Copenhagen! 

Nadya, on behalf of the organizers

 

 

 

Nadezhda T. Doncheva
Assistant professor

University of Copenhagen
Faculty of Health and Medical Sciences

Novo Nordisk Foundation Center for Protein Research

Cellular network biology (Jensen group)

Blegdamsvej 3, Bygning 6
2200 Copenhagen N
DENMARK

nadezhda.doncheva at cpr.ku.dk

www.cpr.ku.dk

 

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From coordinator at rth.dk  Tue Jun 25 12:19:32 2024
From: coordinator at rth.dk (Betina Wingreen Jensen)
Date: Tue, 25 Jun 2024 12:19:32 +0200
Subject: [SocBiN] Aug 16,
 2024 - Symposium on Applied Deep Learning in Bioinformatics (UCPH,
 Copenhagen Biocenter)
Message-ID: <001801dac6e9$2c291360$847b3a20$@rth.dk>

Dear Colleagues, 

We are delighted to announce the upcoming Symposium on Applied Deep Learning
in Bioinformatics (funded by the NNF CRISPRnet project).

The event will take place on Aug 16, 2024, from 10.00 to 15.00 at the
Lundbeckfonden Auditorium, Copenhagen Biocenter, Ole Maaløesvej 5, 2200
Copenhagen N, Denmark.

Registration is free but needed for all attending. 

The meeting is “in person” only.

For more information about the event, to see the programme and to register,
please go to:

https://conferencemanager.events/2ndsymposiumonapplieddeeplearninginbioinfor
matics

On behalf of the organisers (Jan Gorodkin and Lars Juhl Jensen)

Best wishes,

Betina

 

Betina Wingreen Jensen

Special Advisor/Project Manager

 

University of Copenhagen

Department of Veterinary and Animal Sciences

Grønnegårdsvej 3 & 7 & Ridebanevej 3 & 9

1870 Frederiksberg C

 

DIR +45 35 33 47 04

MOB +45 21 51 09 32

 <mailto:bwj at sund.ku.dk> bwj at sund.ku.dk

 

  

 

 
<https://informationssikkerhed.ku.dk/english/protection-of-information-priva
cy/privacy-policy/> How we protect personal data

 

 

 

 

 

registration

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