From arne.elofsson at gmail.com  Thu Oct 10 09:42:24 2024
From: arne.elofsson at gmail.com (Arne Elofsson)
Date: Thu, 10 Oct 2024 09:42:24 +0200
Subject: [SocBiN] Fwd: 2024 ARISE2 Flyer to circulate
In-Reply-To: <29b6a25f29024e75b38188859c0ea7c3@ebox-prod-srv28.win.su.se>
References: <6B45970E-DB7E-40AF-BE34-65187EAC4133@embl.de>
 <29b6a25f29024e75b38188859c0ea7c3@ebox-prod-srv28.win.su.se>
Message-ID: <CAND8g_bDY1VHkZ-pJQa7B1ECy8RmkJFqQ9PE=BWx0Yc+KB_d4A@mail.gmail.com>

Begin forwarded message:

*From: *Brenda Stride <stride at embl.de>
*Subject: **2024 ARISE2 Flyer to circulate*
*Date: *5 October 2024 at 10:44:29 CEST
*Cc: *Monika Lachner <monika.lachner at embl.de>

Dear ARISE2 Partner Organizations,

We would like to ask for your support is sharing the news of ther ARiSE2
call which is currenlty open by sharing the attached flyer with your
networks.

Kind regards,

Brenda
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From arne at bioinfo.se  Mon Oct 14 10:42:00 2024
From: arne at bioinfo.se (Arne Elofsson)
Date: Mon, 14 Oct 2024 10:42:00 +0200
Subject: [SocBiN] Position at EBI+SciLifeLab
Message-ID: <CAND8g_Z5wADLoCBcvkXzDMiGKDb9sS0UkyM91XC-DaBsxCGv6Q@mail.gmail.com>

The three-dimensional (3D) structure dictates its function and can
facilitate mechanistic understanding of biological processes. The recent
advances in Artificial Intelligence (AI)-based methods, such as AlphaFold
and RoseTTaFold, provide high-quality structure models for
biomacromolecules (proteins and nucleic acids) and their complexes small
molecule ligands and have transformed basic and translational life science
research.  The predicted models offer deeper insights into the functional
sites and interaction surfaces underpinning their biological roles.

Elofsson and Velankar teams are interested in exploring some of the
computational challenges in employing AI-based methods for predicting large
biomacromolecular complexes and generate a set of high-quality structure
models. This will be achieved by refining the strategies for predicting
larger biomacromolecular complexes (more than two subunits) and cataloguing
the biomacromolecular interactions in the human proteome. To make the
structural data accessible and valuable in driving life science research,
we are interested in exploiting knowledge graphs (KG) techniques to enrich
the data with structural and functional annotations. The KG will allow
reasoning over the annotations and knowledge transfer across related
proteins by providing a structured representation of known annotations
through nodes and edges.

The method developed within this ARISE2 project will be tested with data
and biological questions arising at the EMBL and SciLifeLab cryo-EM and
integrative structural biology facilities and will be useful for a large
community of researchers in structural biology.


ARISE2 (https://www.embl.org/training/arise2/)

ARISE2 targets technology and method development experts with STEM
backgrounds interested in using their expertise to advance research in the
life sciences.

To address urgent challenges to human and planetary health, new
technologies and services are needed in the Life Sciences. ARISE2 is
designed to meet this need by training fellows in the development of
technologies and methods for the improvement of scientific services while
also preparing them for careers in research infrastructures (RI) to make
these advances available to the scientific community, accelerating
progress.

ARISE2 is an MSCA-funded postdoctoral fellowship programme offering
talented STEM (science, technology, engineering and mathematics) fellows
from around the world the unique opportunity to work on the development
and/or improvement of technologies for Life Science Research while
developing the expertise needed for a career in research infrastructures
making them sought after experts both in academia and industry.
Location of this position

This position is primarily located at EMBL-EBI, Cambridge, UK, but
extensive time will also be allocated to working with the researchers at
the Science for Life Laboratory, Stockholm, Sweden. The fellow will visit
the Science for Life Laboratory, Stockholm, Sweden. The position is for
three years.
Application

Please send a two-page CV and a two-page project proposal within the area
outlined above to Sameer Velankar <sameer at ebi.ac.uk> by Nov 5, 2024.  The
two-page proposal should cover the following areas -

   -

   Background, proposed project
   -

   Expected results & their impact
   -

   Service to be offered
   -

   Consideration of FAIR principals


This is a pre-proposal. In the second step, we will select one candidate by
November 12 at the latest, and together with the candidate, we will submit
a full proposal by the deadline for the ARISE2 call on November 25.
Contacts:

More information about the ARISE2 program can be found at
https://www.embl.org/training/arise2/


   -

   For this application
   -

      Marta Carroni <marta.carroni at scilifelab.se>
      -

      Sameer Velankar <sameer at ebi.ac.uk>
      -

      Arne Elofsson <arne at bioinfo.se>
      -

   For questions about  the ARISE2 program
   -

      arise2 at embl.org




Yours

Arne

-----------------------------------------
  Arne Elofsson                  Science for Life Laboratory
  Tel:+46-(0)70 695 1045   Stockholm University
  http://bioinfo.se/               Box 1031,
  Email: arne at bioinfo.se   17121 Solna, Sweden
  Twitter:   https://twitter.com/arneelof
  Zoom: https://stockholmuniversity.zoom.us/my/arneelof/
  Scholar: http://scholar.google.se/citations?user=s3OCM3AAAAAJ
  ORCID: 0000-0002-7115-9751
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From par.engstrom at scilifelab.se  Mon Oct 14 10:48:50 2024
From: par.engstrom at scilifelab.se (=?utf-8?B?UMOkciBFbmdzdHLDtm0=?=)
Date: Mon, 14 Oct 2024 10:48:50 +0200
Subject: [SocBiN] Open bioinformatician positions at NBIS,
 SciLifeLab Stockholm
Message-ID: <C8ACC028-4FEF-4743-ABC5-05EC095CC78F@scilifelab.se>

Dear all,

We are looking for skilled bioinformaticians to join the SciLifeLab Bioinformatics Platform (NBIS), for providing advanced bioinformatics support to nationally prioritised projects. The positions are part of the SciLifeLab and Wallenberg National Program for Data-Driven Life Science, a 12-year initiative that focuses on data-driven research, within fields essential for improving people’s lives, detecting and treating diseases, protecting biodiversity and creating sustainability. Application deadline: November 3rd.

We currently have two openings in Stockholm, with employment Stockholm University and Karolinska Institutet, respectively. Please see the ads below for further details.

Bioinformatician with expertise in cell and molecular biology:
https://www.su.se/english/about-the-university/work-at-su/available-jobs?rmpage=job&rmjob=24451&rmlang=UK

Bioinformatician with expertise in precision medicine:
https://ki.varbi.com/en/what:job/jobID:758082/type:job/where:4/apply:1

The bioinformaticians will primarily work in projects granted support through our Peer Review Bioinformatics Support track (WABI; https://nbis.se/services/bioinformatics/peerreview).

Best regards,
Pär

-- 
Pär Engström
National Bioinformatics Infrastructure Sweden (NBIS), Science for Life Laboratory
http://www.nbis.se, http://www.scilifelab.se/platforms/nbis




From michael.hiller at senckenberg.de  Thu Oct 17 10:56:03 2024
From: michael.hiller at senckenberg.de (Michael Hiller)
Date: Thu, 17 Oct 2024 10:56:03 +0200
Subject: [SocBiN] Postdoc and Bioinformatics position to work on genomes of
 bats
In-Reply-To: <7D7ED312-4B52-4B5F-A222-F948A3506B39@senckenberg.de>
References: <7D7ED312-4B52-4B5F-A222-F948A3506B39@senckenberg.de>
Message-ID: <BF5E3250-56AF-4186-9C82-669BE25CB019@senckenberg.de>

Dear colleagues,

my group at the Senckenberg in Frankfurt has openings for Postdoc and Bioinformatician positions to work on genomes of bats and other mammals (assembly, annotation, lots of comparative genomics and transcriptomics, etc). 

Thanks to generous funding by the ERC, we have funding for these positions for 6 years.
https://tbg.senckenberg.de/hillerlab/jobs/

I would highly appreciate it if you could forward this announcement to anyone who could be interested in these positions.

Thanks a lot for your help !! 

- Michael

> 
> 


> 
> 



-- 
Michael Hiller, PhD
Professor of Comparative Genomics
LOEWE Centre for Translational Biodiversity Genomics,
Senckenberg Society for Nature Research & Goethe University, 
Frankfurt am Main, Germany




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From chinmaydwibedi at gmail.com  Sun Oct 20 12:40:47 2024
From: chinmaydwibedi at gmail.com (chinmay kumar Dwibedi)
Date: Sun, 20 Oct 2024 12:40:47 +0200
Subject: [SocBiN] Fwd: PhD position in human gut microbiota studies
In-Reply-To: <CAM-csmR=xyxDv=GjfZ24ANM9PM2ctbXCVrO2CQhwXx6+0ickCQ@mail.gmail.com>
References: <CAM-csmR=xyxDv=GjfZ24ANM9PM2ctbXCVrO2CQhwXx6+0ickCQ@mail.gmail.com>
Message-ID: <CAM-csmTzWaNXEXiQ7SD1MWErzBR1jnQQNL7LVFBGd+-fxZwcVA@mail.gmail.com>

Dear members of socbin,

We are currently seeking up to two PhD students (Bioinformatics) to join
our exciting research on human gut associated microbes at strain level! The
successful candidates will be affiliated with the Department of Clinical
Microbiology at Umeå University
<https://www.linkedin.com/company/umea-universitet/> , in a dynamic
international setting! Additionally, the candidates will be part of The
Laboratory for Molecular Infection Medicine Sweden, MIMS
<https://www.linkedin.com/company/the-laboratory-for-molecular-infection-medicine-sweden-mims/>
(the
Swedish node of Nordic EMBL partnership for molecular medicine)and the DDLS
network (hosted by SciLifeLab <https://www.linkedin.com/company/scilifelab/>)
– This offers numerous opportunities for collaboration with researchers
both in Sweden and across Europe! Please feel free to share this within
your network!

For more details on the position and "how to apply" follow the link below:

https://umu.varbi.com/what:job/jobID:763048/
<https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fumu.varbi.com%2Fwhat%3Ajob%2FjobID%3A763048%2F&data=05%7C02%7Cchinmay.dwibedi%40umu.se%7Ca8107a9209d2407664fe08dcedcb7eef%7C5a4ba6f9f5314f329467398f19e69de4%7C0%7C0%7C638646705459379587%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=fADusXC1Wgu1x767eeG2InnDG8evtl7nVj8qN5fLAEs%3D&reserved=0>
 (Swedish)

https://umu.varbi.com/en/what:job/jobID:763048/
<https://eur01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fumu.varbi.com%2Fen%2Fwhat%3Ajob%2FjobID%3A763048%2F&data=05%7C02%7Cchinmay.dwibedi%40umu.se%7Ca8107a9209d2407664fe08dcedcb7eef%7C5a4ba6f9f5314f329467398f19e69de4%7C0%7C0%7C638646705459403554%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C0%7C%7C%7C&sdata=p3l%2BEV%2Fq%2FYWsn89Dap8%2BJ3u3WsZXlzcH%2FdFeCwyiCP4%3D&reserved=0>
 (English)


Best regards
Chinmay
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From torgeir.r.hvidsten at nmbu.no  Wed Oct 23 08:00:00 2024
From: torgeir.r.hvidsten at nmbu.no (Torgeir Rhoden Hvidsten)
Date: Wed, 23 Oct 2024 06:00:00 +0000
Subject: [SocBiN] Three PhD-positions within computational
 biology/bioinformatics
Message-ID: <SVZP279MB0815D845BE5A00AEBEC8B484DC4C2@SVZP279MB0815.NORP279.PROD.OUTLOOK.COM>

We are seeking three PhD students within computational biology/bioinformatics at the Norwegian University of Life Sciences:

One PhD student within comparative evolutionary genomics. What happens with gene regulation after the genome is doubled? Help us find out using RNA-seq, ATAC-seq and Hi-C data!
https://www.jobbnorge.no/en/available-jobs/job/268673/phd-scholarship-within-comparative-evolutionary-genomics

Two PhD students to explore host-microbe interactions using genomics. The positions are part of HoloGen, a MSCA Doctoral Network.
https://www.jobbnorge.no/en/available-jobs/job/268532/two-phd-scholarships-within-computational-host-microbiome-genomics-hologenomics
HoloGen: https://www.hologen-network.eu

Deadlines: October 31st.

Torgeir



--
Torgeir R. Hvidsten

Professor in Bioinformatics
Norwegian University of Life Sciences
Phone: +4747957383, Office: here<https://link.mazemap.com/M4suovMC>
http://www.trhvidsten.org<http://www.trhvidsten.org/>
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From arne.elofsson at gmail.com  Wed Oct 30 09:33:25 2024
From: arne.elofsson at gmail.com (Arne Elofsson)
Date: Wed, 30 Oct 2024 09:33:25 +0100
Subject: [SocBiN] Post from Frank Noe (@FrankNoeBerlin)
Message-ID: <CAND8g_Y0mxFbQ8BmymPQX+EXH8TTwVLK5J_=CvCu8En707M-Bw@mail.gmail.com>

Frank Noe (@FrankNoeBerlin) posted at 5:55 pm on Fri, Oct 18, 2024:
Join us on our exciting mission to disrupt the molecular sciences with
#MachineLearning #AI at
@MSFTResearch AI for Science. Researcher and Engineering positions open,
each can be in Berlin DE or Cambridge  UK:

https://t.co/mphLkeiOkz
https://t.co/m9Zp0SQ7Eq
(
https://x.com/FrankNoeBerlin/status/1847305448279486626?t=CVzQEQlOfk6aSoAHwRlJWQ&s=03
)
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