[Funcoup] GIN issues

[Erik Sonnhammer]

Great, thanks!

Not so much has changed it seems - there are now 276508 pairs with 
abs(PLC)>  0.1.

On the other hand, only 73827 of those pairs are found in the old 
dataset, so there is definitely scope for revisiting this datatype.

Perhaps one should also lower the cutoff to include more pairs?

/Erik

On 11/07/2011 04:25 PM, Andrey Alexeyenko wrote:
>> 2. It does not seem to be in prj.sbc.erison.8/FunCoup2/FunCoup_resources/
> It is there, under
> FunCoup_resources/simple_sgadata_correlations_100308.txt
>
>>
>> 3. We forgot to specify the PLC cutoff used to obtain the 255178 GIN pairs.
> abs(PLC)>  0.1
>
> Andrey
>
>>
>>
>> The reason I looked is that the Boone lab has released the latest
>> pearson correlation data, see
>> http://drygin.ccbr.utoronto.ca/DOWNLOAD/Download.html.  It would be
>> great if somebody could compare this version with the used one.
>>
>> /Erik
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