[Funcoup] GIN issues

Andrey Alexeyenko andrej.alekseenko at scilifelab.se
Mon Nov 7 16:25:33 CET 2011


> 1. It is not listed in http://funcoup.sbc.su.se/inputdata_fc2.html.
OK, inserted. Pls provide data for the last column (I never knew it...)
> (Does this affect the count of input datasets? We say 53 in the paper)
No.

>
> 2. It does not seem to be in prj.sbc.erison.8/FunCoup2/FunCoup_resources/
It is there, under
FunCoup_resources/simple_sgadata_correlations_100308.txt

>
> 3. We forgot to specify the PLC cutoff used to obtain the 255178 GIN pairs.
abs(PLC) > 0.1

Andrey

>
>
> The reason I looked is that the Boone lab has released the latest
> pearson correlation data, see
> http://drygin.ccbr.utoronto.ca/DOWNLOAD/Download.html.  It would be
> great if somebody could compare this version with the used one.
>
> /Erik
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