[Funcoup] [SNIC support #70987] Re: SBC AFS file server crash at PDC

[Andrey Alexeyenko]

Yes, that's a disappointment. Much later I recalled that they gave out 
volumes >5GB on the condition of no backup (I myself lost 40GB this way...).

I do store the code, and probably nothing more.
Some post-processing was done, although not much. However I never 
processed the MEX files - these were normalized on fly (while reading 
in), so MEX are safe - if they are stored somwhere else.

And what is almost definitely lost is PPI (IntAct). I moved it long ago 
to one of those big volumes...

Andrey



On 2012-05-31 11:53, Thomas Schmitt wrote:
> I do have the training results, identifier mappings and the data I have upload.
> That is: PEX, Blast bit-scores, InParanoid mappings, Complex GS
> Its about 2G in total.
> Although I'm not 100% positive that Andrey hasn't changed the files after my upload.
>
> /Thomas
>
>
> On May 31, 2012, at 11:38 AM, Erik Sonnhammer wrote:
>
>> Hi, it seems we won't get back the FunCoup scratch disk.
>>
>> How much of that information is still around?  I think we should have at
>> least all of the raw datasets somewhere, and ideally all the training
>> results.
>>
>> Should we ask for a backed up project disk for FunCoup, or is it enough
>> to keep it on Andrey's volume?
>>
>> /Erik
>>
>> On 05/30/2012 10:52 AM, Dejan Vitlacil via SNIC support wrote:
>>> Hi Erik,
>>>
>>> unfortunately we didn't manage to recover data from the broken RAID.
>>>
>>> Cheers,
>>> Dejan
>>> PDC-Staff
>>>
>>>> [Erik.Sonnhammer at sbc.su.se - Mon May 28 08:01:14 2012]:
>>>>
>>>> Hi, I'm wondering if you have managed to salvage "prj.sbc.erison.8"
>>>> from
>>>> the broken RAID.
>>>>
>>>> Bests
>>>> Erik
>>>>
>>>> On 2012-03-20 16:32, Dejan Vitlacil via SNIC support wrote:
>>>>> Hi Erik.
>>>>>
>>>>> Sorry to inform you that your volume "prj.sbc.erison.8" was created
>>>> without backup, on your request.
>>>>> So it will not be among volumes that we are restoring from our tape
>>>> backup.
>>>>>
>>>>> On the other hand, we are working and trying to save as much as we
>>>> can from the broken RAID, but
>>>>> right now I can't give you more information as it is ongoing
>>>> process.
>>>>>
>>>>> We will contact you as soon as we know more.
>>>>>
>>>>> Cheers,
>>>>> Dejan
>>>>> PDC-Staff
>>>>>
>>>>>
>>>>>> [Erik.Sonnhammer at sbc.su.se - Tue Mar 20 15:15:31 2012]:
>>>>>>
>>>>>> Ledsen men jag måste åter önska att prj.sbc.erison.8 kommer
>>>> tillbaka
>>>>>> så
>>>>>> snart som möjligt.  Den verkar ha försvunnit igen!
>>>>>>
>>>>>> MVH
>>>>>> Erik
>>>>>>
>>>>>> On 3/20/2012 2:49 PM, Erik Sonnhammer wrote:
>>>>>>> Hej, ni kan bortse från denna ticket - den var redan tillbaka.
>>>>>>>
>>>>>>> Ber om ursäkt
>>>>>>> Erik
>>>>>>>
>>>>>>> On 03/20/2012 02:18 PM, PDC support via SNIC support wrote:
>>>>>>>> Greetings,
>>>>>>>>
>>>>>>>> This is an automatic confirmation that we have received your
>>>>>> trouble
>>>>>>>> ticket
>>>>>>>> regarding:
>>>>>>>>       "Re: SBC AFS file server crash at PDC",
>>>>>>>> a summary of which appears below.
>>>>>>>>
>>>>>>>> There is no need to reply to this message right now.  Your ticket
>>>>>> has
>>>>>>>> been
>>>>>>>> assigned an ID of [SNIC support #70987].
>>>>>>>>
>>>>>>>> Please include the string (including the brackets):
>>>>>>>>
>>>>>>>>             [SNIC support #70987]
>>>>>>>>
>>>>>>>> in the subject line of all future correspondence about this
>>>> issue.
>>>>>> To
>>>>>>>> do so,
>>>>>>>> you may reply to this message.
>>>>>>>>
>>>>>>>>                            Thank you,
>>>>>>>>                            support at pdc.kth.se
>>>>>>
>>>> -------------------------------------------------------------------------
>>>>>>>> Hej, om man får be om en tjänst så vore det att öka prioriteten
>>>> för
>>>>>>>> /afs/pdc.kth.se/misc/pdc/volumes/sbc/prj.sbc.erison.8.  Den ser
>>>>>> kanske
>>>>>>>> ut som en projektvolym men är i själva verket min hemkatalog.
>>>>>>>>
>>>>>>>> MVH
>>>>>>>> Erik Sonnhammer
>>>>>>>>
>>>>>>>> On 03/19/2012 06:58 PM, Erik Sjölund wrote:
>>>>>>>>> Regarding the AFS file server crash at PDC. You could follow the
>>>>>>>>> news here:
>>>>>>>>>
>>>>>>>>> http://www.pdc.kth.se/cgi-bin/flash/flash.py
>>>>>>>>>
>>>>>>>>> Here is some more information from PDC:
>>>>>>>>> (short translation: Home volumes have been restored but project
>>>>>>>>> volumes will take a while)
>>>>>>>>>
>>>>>>>>> "ALLA volymer som fanns på server shad.pdc.kth.se är borta pga
>>>> att
>>>>>>>>> _tre_ diskar i shad's RAID failade inom en kort tid. Vi håller
>>>> på
>>>>>> att
>>>>>>>>> läsa tillbaka data från tape till SBCs andra server
>>>>>>>>> grinner.pdc.kth.se. Alla hemkataloger är tillbaka, men
>>>>>>>>> projektvolymerna kommer ta en (ännu okänd) bra stund till.
>>>> Tyvärr
>>>>>> så
>>>>>>>>> har SBC optimerad sina AFS servrar för storlek, så det är mycket
>>>>>> data
>>>>>>>>> per server och spindel."
>>>>>>>>>
>>>>>>>>> cheers,
>>>>>>>>> Erik
>>>>>>>>> _______________________________________________
>>>>>>>>> Sbc mailing list
>>>>>>>>> Sbc at sbc.su.se
>>>>>>>>> https://mail.sbc.su.se/mailman/listinfo/sbc
>>>>>>>>
>>>>>>>>
>>>>>>
>>>>
>>>>
>>>>
>>>
>>
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