[Inparanoid] Analyzing 17 proteome orthology with Inparanoid

[Erik Sonnhammer]

Hi,

If you want ortholog groups that include all 17 species, InParanoid 
won't work. But if you only need pairwise relationships (which is 
usually the case) then it will.  Then you have to run InParanoid for all 
17*16/2 pairs.

Erik Sonnhammer

On 09/20/2014 11:32 AM, Sammy Desilva wrote:
> Hi, I want to assign orthology relationship among 17 proteomes. Could 
> someone please suggest me how to do it offline in Inparanoid? The 
> running command for such cases? I guess putting 3 organism it treats 
> third as outgroup.
> Thanks
>
>
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