[Inparanoid] problem runing InParanoid

Ricardo de Marco rdemarco77 at gmail.com
Thu May 12 15:08:04 CEST 2016


I am running inparanoid v4.1 and performed the installation of all
components including v 2.2.16 of standalone blast. The last two runs I made
with the program apparently performed well, but i got several warnings like
this in the last steps of the program:
no element found at line 1, column 0, byte -1 at ./blast_parser.pl line 110.
[formatdb] WARNING: Cannot add sequence number 3 (lcl|3_./tmpd) because it
has zero-length.

[formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST database.
[blastall] WARNING: Unable to open tmpd.pin
[blastall] WARNING: CDF34032: Unable to open tmpd.pin
[blastall] WARNING: CDF34032: Unable to open tmpd.pin
[blastall] FATAL ERROR: CDF34032: Database ./tmpd was not found or does not
exist
I would like to know if you know what could be causing this and if this
affects the final result of the program.
Thank you for your attention.
Ricardo
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