[Inparanoid] problem runing InParanoid

[Erik Sonnhammer]

sounds like you have zero-length sequences - try removing these.

Erik

On 2016-05-12 15:08, Ricardo de Marco wrote:
> I am running inparanoid v4.1 and performed the installation of all 
> components including v 2.2.16 of standalone blast. The last two runs I 
> made with the program apparently performed well, but i got several 
> warnings like this in the last steps of the program:
> no element found at line 1, column 0, byte -1 at ./blast_parser.pl 
> <http://blast_parser.pl> line 110.
> [formatdb] WARNING: Cannot add sequence number 3 (lcl|3_./tmpd) 
> because it has zero-length.
>
> [formatdb] FATAL ERROR: Fatal error when adding sequence to BLAST 
> database.
> [blastall] WARNING: Unable to open tmpd.pin
> [blastall] WARNING: CDF34032: Unable to open tmpd.pin
> [blastall] WARNING: CDF34032: Unable to open tmpd.pin
> [blastall] FATAL ERROR: CDF34032: Database ./tmpd was not found or 
> does not exist
> I would like to know if you know what could be causing this and if 
> this affects the final result of the program.
> Thank you for your attention.
> Ricardo
>
>
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