[Primeusers] PrimeGSR installation

[Jacky Hess]

Hi,

I have switched to Bison 2.3 and the code compiles without problems now. 
I had also commented out the difficult lines as suggested. This removed 
the warning messages but not the error.

Thanks very much for your help!

Jacky

Lars Arvestad wrote:
> I am running 2.3, which gives me warnings rather than errors. I have not 
> been able to figure out how to correctly write error rules. The idea is 
> that we should be able to interrupt parsing and give a, more or less, 
> sensible error message.
>
> One workaround would be to delete the difficult lines, 141, 177, and 
> 178, but I have not tested this. Please let me know how it works!
>
>     Lars
>
>
> jacky at ebi.ac.uk wrote:
>   
>> Hello,
>>
>> I am having trouble compiling PrimeGSR for use on our computing cluster.
>>
>> Initially there were some problems with incompatible Bison and M4 versions
>> but I have come past that step in compilation now using Bison 2.4.1 and M4
>> 1.4.9.
>>
>> However, compilation now stops at the following stage:
>>
>> bison -d -y -p yytree_ NHXparse.y
>> NHXparse.y:141.30-31: $$ for the midrule at $3 of `subtree' has no
>> declared type
>> NHXparse.y:177.96-97: $$ for the midrule at $3 of `ext_annotation' has no
>> declared type
>> NHXparse.y:178.97-98: $$ for the midrule at $3 of `ext_annotation' has no
>> declared type
>> NHXparse.y:141.11-89: warning: type clash on default action: <v> != <>
>> NHXparse.y:177.18-128: warning: type clash on default action: <a> != <>
>> NHXparse.y:178.18-130: warning: type clash on default action: <a> != <>
>> make: *** [NHXparse.c] Error 1
>>
>> It looks like it could still be a Bison issue. Which version of Bison are
>> you running your installation with?
>>
>> Thanks very much,
>>
>> Jacky
>>
>>
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>>     
>
>
>