[Primeusers] Release 1.0 of PrimeGSR

[Filipe Garrett]

Dear Lars,

Despite not knowing what it was, I've been a able to fix the previous error ("not a valid alphabet 
state") by remaking the input files (probably some typo).
However a new error occurs:
"
Error:
     Probability: Division with zero attempted!
"

Any idea of what may be?
thanks in adv,
FG


Lars Arvestad wrote:
>> I've just installed primeGSR and had some problems. It couldn't find the "g2f" library. I removed it 
>> from the Makefile and it compiled without errors. Run the sample files and everything perfect (at 
>> least I think since I don't know if the output is correct). What is the function of this library? Is 
>> it normal to compile without it?
>>   
> 
> Do you mean "g2c"? This used to be needed when linking the linear 
> algebra libraries BLAS and LAPACK. Maybe this need has disappeared in 
> modern systems. I will remove it from the makefile!
> 
>> Then I was trying primeGSR and managed to input everything correctly (I think). However an error 
>> occurred stating:
>>
>> "
>> the state  is notError:
>>      not a valid alphabet state
>> "
>>
>> I'm using this command line on a PC Fedora Core 7 Linux:
>> primeGSR -d -o output.mcmc -Bp 0.1 0.1 -Ed Gamma -i 1000 -t 10 -Sm JTT -Hi tree.nwk in_seq.fas in_seq.gs
> 
> This bad error message is due to finding an unrecognized/unsupported 
> character in the sequence data. If you have trouble finding the 
> offending sequence, send it to me and I will take a look at it.
> 
> Thanks for the bug reports!
> Lasse
> 

-- 
Filipe G. Vieira
Departament de Genetica
Universitat de Barcelona
Av. Diagonal, 645
08028 Barcelona
SPAIN
Phone: +34 934 035 306
Fax: +34 934 034 420
fgarret at ub.edu
http://www.ub.edu/molevol/