[Primeusers] PrimeGSR optimization with fixed tree

Jacky Hess jacky at ebi.ac.uk
Tue Sep 29 11:38:56 CEST 2009


Hello,

I am trying to run primeGSR on a fixed gene tree to estimate the maximum 
a posteriori probability but it looks like the optimization is stuck and 
never really goes beyond the first set of values.

Also I receive the following error messages which I suspect are related 
to this:

# Tried to set length of node 17 to 0 which is less than minimum 
4.45015e-308

etc.

Does anyone know what might be going wrong here?

Thanks very much,

Jacky


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