[Socbin] Last call for participation Text Mining tutorials and workshop BioTM
Yvan Saeys
yvan.saeys at psb.vib-ugent.be
Fri Apr 23 16:43:23 CEST 2010
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LAST CALL FOR PARTICIPATION
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Workshop BioTM-2010
Advances in Bio Text Mining
May 10-11, 2010, Ghent, Belgium
http://www.clips.ua.ac.be/BioTM2010/index.html
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REGISTRATION DEADLINE : May 1st 2010
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The program of the workshop includes:
- an extensive tutorial on Bio Text Mining by Martin Krallinger (CNIO,
Spain)
- invited talks by leading scientists in the field:
Sampo Pyysalo (University of Tokyo, Japan)
Kevin Cohen (Center for Computational Pharmacology and The MITRE
Corporation, USA)
Filip Ginter (University of Turku, Finland)
- invited talks by experienced scientists from industry:
Jean-Marc Neefs (Janssen Pharmaceuticals)
Luc Dehaspe and Maté Ongenaert (Oncomethylome)
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Text mining has become indispensible in many biological and biomedical
sciences. Having to keep up with an
increasing number of publications, text mining techniques enable
retrieval and analysis of large amounts of
documents in a fully automated fashion. They allow for extraction of
facts described in the literature that
have not yet been recorded in databases, thus providing a necessary tool
to obtain a complete overview of
all available knowledge.
Recently, the application of text mining and natural language processing
techniques to the biological and
medical sciences has recieved increasing interest. In addition to many
new workshops and conferences arising
in this domain, recently also a number of community-wide tasks were
conducted to benchmark text mining
techniques on specific challenges (e.g. BioCreative, BioNLP Shared Task,
...).
By discussing the latest developments and potentially new applications
in text mining amongst scientists in
both academia and industry, this workshop aims to provide a broad view
on text mining tools in biology and
biomedicine. We are reaching out to a broad public, including
researchers with an interest in text mining
but with little or no experience in this domain. To this end, the
workshop will start with an extensive
tutorial on text mining in the bio-sciences, providing sufficient
background knowledge for novices.
Next, a number of keynote talks will be given by leading scientists,
presenting the latest advances in the
field. Furthermore, selected abstracts will be presented during a flash
presentation session, as well
as a poster session during the coffee and lunch breaks.
Finally, we plan on having a round-table discussion about the broader
applicability of text-mining tools in
the biological sciences, trying to bridge the gap between theoretical
algorithms and experimental work.
ORGANISATION / PROGRAM COMMITTEE
Sofie Van Landeghem
Yvan Saeys
Thomas Abeel
Bioinformatics and Evolutionary Genomics group
VIB Department of Plant Systems Biology
Ghent University
Belgium
Walter Daelemans
Roser Morante
Vincent Van Asch
CLiPS - Text Mining Group
Faculty of Arts
University of Antwerp
Belgium
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Dr. Yvan Saeys, PhD
DEPARTMENT OF PLANT SYSTEMS BIOLOGY Fax:32 (0)9 331 38 09
BIOINFORMATICS TEAM Tel:32 (0)9 331 36 95
GHENT UNIVERSITY, Technologiepark 927, B-9052 Gent, Belgium
Vlaams Instituut voor Biotechnologie VIB
mailto:yvan.saeys at ugent.be
http://bioinformatics.psb.ugent.be/
http://www.psb.ugent.be/~yvsae/
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